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Report for CCDS57651.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57651.1 Public Mus musculus 9 Ccdc82 23 108 98 CCDS HistoryNCBI Gene:66396Re-query CCDS DB by CCDS ID:57651.1Re-query CCDS DB by GeneID:66396See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57651.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110583.9 ENSMUSP00000106212.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110583.9Link to Ensembl Protein Viewer:ENSMUSP00000106212.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110583Re-query CCDS DB by Protein ID:ENSMUSP00000106212
Original member Current member EBI ENSMUST00000217444.1 ENSMUSP00000150947.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217444.1Link to Ensembl Protein Viewer:ENSMUSP00000150947.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217444Re-query CCDS DB by Protein ID:ENSMUSP00000150947
Original member NCBI NM_025534.3 NP_079810.2 Updated not alive Link to Nucleotide Sequence:NM_025534.3Link to Protein Sequence:NP_079810.2Re-query CCDS DB by Nucleotide ID:NM_025534Re-query CCDS DB by Protein ID:NP_079810
Current member NCBI NM_025534.4 NP_079810.2 Accepted alive Link to Nucleotide Sequence:NM_025534.4Link to Protein Sequence:NP_079810.2Re-query CCDS DB by Nucleotide ID:NM_025534Re-query CCDS DB by Protein ID:NP_079810Link to BLAST:NP_079810.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079810.2 518 Q6PG04 518 100% 0 0

Chromosomal Locations for CCDS 57651.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 13252085 13252798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13253226 13253430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13262736 13262828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13266344 13266468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13272331 13272501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13281395 13281580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13289347 13289409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGTACATGTTAGAAGACACGAAACAAGAAAAAATTCTAAAACCCAAAAACCTGAACAAAAATCTCGAG
TTGATTGGCATCGGACTAAAAGAAGCATCTCACAGTTATTTGATAGTGATGAAGAGCTAGATAGTAATGA
GGAACTTGACAGCGATGAAGAGCATGATAGTGGGGAAAGTATTGACAGTGATGAAGAGCTTGATATTAGC
AAGAAGTCTGATATTAATGAACTACCAGAAAAGGAAACAGAGCTTAAATTAATCAAAGTTGAAAGTCAGG
GAAGCAACAGTAAACATCTTACAAACACCAGCAATAGTTCAGCAGATGAAGAACAACTGAAGGAAACCAA
ACATAATGACTTACCAGATGATGAAGCTCACCCTGGTCAAGCAGAGAATCATCACAACAGACACACTGGG
CAAATCCTAGAGGAAGATATGGAAGATGAATACATCAAGCCAGGAAAAAGAAAAAGGCTGTCCTCTGTGA
TGTATGACAGTGATGAGAGCGATGACAGTGATATCCTAATTAGAAAAGCAAGTGCTAAACACCCACGCAG
GGTGGTCGAGGATGAATGTTCTTCATTGGAAATGGAGCAAGAAACTCCTGAGAAGTCATCAGCTGCTCGA
AAGCGAGAATACCACCAGAAGCTACAGGAGCTTTCTGAGAGATCACGCCAGAGACGGAGGCGCAATAGTG
GTAGAAATTTTGAGGACTCTGAAAAGGACTCTTGTTCAGGCACTGGTGAGGAGGATGAAGATGAGGACGA
GGATGATTACAGATATGATGAAGATGGGGATGATTACATGATTGATGATTTTGTAGTGCGAAATGAGGAA
GGCGATGACGAGAATAGCAATCAACAAGGAGAAAATCTGACTACATCACAACTGAAATTAGTAAAACAGA
ATTCTCTTTATTCTTTTAGTGACCATTATACTCACTTTGAAAGAGTTGTGAAGGCTCTTCTGATCAATGC
TTTTGATGAATCTTTTCTGGAAACTTTGTATGCTGGCACCAGGAAGAAATCCTACGCGAAAGATATGTTG
ACATCTCTTCATTATTTGGATAATCGCTTTATTCAACCCCGTCTAGAGAGTTTAGTCTCTAGAAGTCGAT
GGAAAGAGCAATATAAGGAGCGGGTTGAAAGCTACTCTAACTTAAACATCCTTTCAAAGAGCCCTGAGAA
CTGTGTATGCCAGGCTTGTGGGCTGCATCGCCACTGTAAATTTTCAGTGCATCTCTCAGGAAAGTTATAC
AACATCAGGACGATGGAAACAGATGATTTCATGTCACATGACAAGCAGGTGTTTACTGTTGGCAGAATTT
GTGTTGAACGTACCAGAATTTATCATAAACTAAAGCATTTTAAATTTAAACTGTACCAAGACTGCTGCTT
AATTGCAAAACCAGAAGAAGTTGGAGATGAACAGGTTAAAGATACAGTAAAGAGAGTCTTCAATCATTCA
AAAGAAAGAGGCTGGATTAGAAAGAAATATGATCAACTGCAGAACTTTCTCAATTCTGCGGATTATTTTC
AAGATGAGAAGTTTTAA

Translation (518 aa):
MVHVRRHETRKNSKTQKPEQKSRVDWHRTKRSISQLFDSDEELDSNEELDSDEEHDSGESIDSDEELDIS
KKSDINELPEKETELKLIKVESQGSNSKHLTNTSNSSADEEQLKETKHNDLPDDEAHPGQAENHHNRHTG
QILEEDMEDEYIKPGKRKRLSSVMYDSDESDDSDILIRKASAKHPRRVVEDECSSLEMEQETPEKSSAAR
KREYHQKLQELSERSRQRRRRNSGRNFEDSEKDSCSGTGEEDEDEDEDDYRYDEDGDDYMIDDFVVRNEE
GDDENSNQQGENLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINAFDESFLETLYAGTRKKSYAKDML
TSLHYLDNRFIQPRLESLVSRSRWKEQYKERVESYSNLNILSKSPENCVCQACGLHRHCKFSVHLSGKLY
NIRTMETDDFMSHDKQVFTVGRICVERTRIYHKLKHFKFKLYQDCCLIAKPEEVGDEQVKDTVKRVFNHS
KERGWIRKKYDQLQNFLNSADYFQDEKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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