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Report for CCDS58000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58000.1 Public Homo sapiens 1 TRABD2B 24 110 108 CCDS HistoryNCBI Gene:388630Re-query CCDS DB by CCDS ID:58000.1Re-query CCDS DB by GeneID:388630See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58000.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000606738.3 ENSP00000476820.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000606738.3Link to Ensembl Protein Viewer:ENSP00000476820.1Re-query CCDS DB by Nucleotide ID:ENST00000606738Re-query CCDS DB by Protein ID:ENSP00000476820
Original member Current member NCBI NM_001194986.2 NP_001181915.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001194986.2Link to Protein Sequence:NP_001181915.1Re-query CCDS DB by Nucleotide ID:NM_001194986Re-query CCDS DB by Protein ID:NP_001181915Link to BLAST:NP_001181915.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001181915.1 517 A6NFA1 517 100% 0 0

Chromosomal Locations for CCDS 58000.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 47765902 47766106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47775170 47775439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47778454 47778544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47794586 47794760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47801473 47801619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47994034 47994597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47996688 47996789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGCACGCCGCCCTGGCGGGGCCGCTGCTCGCCGCCCTCCTCGCCACCGCTCGCGCCCGCCCGCAGCCCC
CGGACGGAGGACAGTGCCGGCCGCCCGGATCGCAGAGGGACTTGAACTCCTTCCTGTGGACGATTCGGCG
TGATCCTCCGGCCTACCTGTTTGGCACTATTCACGTCCCCTACACCCGCGTCTGGGACTTCATCCCGGAC
AACTCCAAGGCAGCCTTCCAGGCTAGCACCCGTGTCTACTTTGAGCTGGACCTTACAGACCCCTACACCA
TCTCGGCCCTGGCCAGCTGCCAGCTGCTGCCGCACGGGGAAAACCTGCAGGACGTGCTGCCCCACGAGCT
TTACTGGCGCTTGAAGCGCCACCTGGACTACGTGAAGTTGATGATGCCCTCCTGGATGACGCCCGCTCAG
CGGGGCAAGGGGCTCTATGCTGACTACCTATTCAATGCCATCGCGGGCAACTGGGAGCGCAAGAGGCCCG
TCTGGGTGATGCTCATGGTAAACTCGCTCACAGAGAGGGACGTGCGCTTCCGTGGTGTGCCCGTGCTCGA
CCTCTACCTGGCCCAGCAGGCTGAGAAGATGAAGAAGACCACAGGGGCTGTGGAGCAGGTGGAGGAGCAG
TGCCATCCCCTCAACAACGGGCTCAACTTCTCCCAGGTGCTGTTTGCCCTGAACCAAACCCTGCTGCAGC
AGGAGAGTGTGCGGGCCGGGAGCCTGCAGGCCTCCTACACCACGGAGGACCTCATCAAGCACTACAACTG
CGGAGACCTCAGCGCAGTCATCTTCAACCACGACACATCCCAGCTGCCCAACTTTATCAACACCACCCTC
CCGCCACACGAGCAGGTGACGGCCCAGGAGATTGACAGCTACTTCCGCCAGGAGCTCATCTACAAGAGGA
ATGAGCGCATGGGGAAGAGGGTCATGGCGCTTCTACGGGAGAACGAGGACAAGATCTGCTTCTTTGCCTT
CGGAGCAGGTCACTTTCTGGGGAACAACACAGTCATCGACATCCTGCGGCAGGCAGGGCTGGAGGTGGAC
CACACACCCGCCGGGCAGGCCATACACAGCCCTGCCCCCCAGAGCCCAGCGCCCTCTCCTGAGGGGACCT
CGACGAGCCCGGCCCCAGTGACCCCAGCTGCCGCTGTCCCCGAAGCACCCTCTGTGACCCCCACCGCCCC
ACCAGAGGATGAGGATCCAGCCCTGTCCCCACACCTCCTGCTCCCCGACAGCCTCAGCCAGCTGGAGGAG
TTTGGCCGGCAGAGGAAGTGGCACAAGAGGCAGAGCACACACCAGCGGCCGCGGCAGTTCAATGACCTCT
GGGTCCGCATCGAGGACAGCACCACCGCCTCACCACCCCCGCTGCCCCTGCAGCCCACCCACAGCTCGGG
GACCGCCAAGCCCCCCTTCCAGCTTTCAGACCAGCTACAACAGCAGGACCCGCCAGGGCCCGCCAGCAGC
TCGGCACCCACCCTGGGCCTTCTCCCCGCCATCGCCACCACCATCGCTGTCTGCTTCCTGCTGCATAGCC
TTGGGCCCTCCTGA

Translation (517 aa):
MHAALAGPLLAALLATARARPQPPDGGQCRPPGSQRDLNSFLWTIRRDPPAYLFGTIHVPYTRVWDFIPD
NSKAAFQASTRVYFELDLTDPYTISALASCQLLPHGENLQDVLPHELYWRLKRHLDYVKLMMPSWMTPAQ
RGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTERDVRFRGVPVLDLYLAQQAEKMKKTTGAVEQVEEQ
CHPLNNGLNFSQVLFALNQTLLQQESVRAGSLQASYTTEDLIKHYNCGDLSAVIFNHDTSQLPNFINTTL
PPHEQVTAQEIDSYFRQELIYKRNERMGKRVMALLRENEDKICFFAFGAGHFLGNNTVIDILRQAGLEVD
HTPAGQAIHSPAPQSPAPSPEGTSTSPAPVTPAAAVPEAPSVTPTAPPEDEDPALSPHLLLPDSLSQLEE
FGRQRKWHKRQSTHQRPRQFNDLWVRIEDSTTASPPPLPLQPTHSSGTAKPPFQLSDQLQQQDPPGPASS
SAPTLGLLPAIATTIAVCFLLHSLGPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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