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Report for CCDS58097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58097.1 Public Homo sapiens 10 SHTN1 24 110 108 CCDS HistoryNCBI Gene:57698Re-query CCDS DB by CCDS ID:58097.1Re-query CCDS DB by GeneID:57698See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58097.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392901.10 ENSP00000376635.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392901.10Link to Ensembl Protein Viewer:ENSP00000376635.4Re-query CCDS DB by Nucleotide ID:ENST00000392901Re-query CCDS DB by Protein ID:ENSP00000376635
Original member Current member NCBI NM_001258300.1 NP_001245229.1 Accepted alive Link to Nucleotide Sequence:NM_001258300.1Link to Protein Sequence:NP_001245229.1Re-query CCDS DB by Nucleotide ID:NM_001258300Re-query CCDS DB by Protein ID:NP_001245229Link to BLAST:NP_001245229.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245229.1 498 A0MZ66-8 498 100% 0 0

Chromosomal Locations for CCDS 58097.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 116900537 116900540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116901765 116901957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116906627 116906747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116911790 116911843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116915375 116915484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116921434 116921516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116927792 116927891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116929849 116930002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116940466 116940612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116944924 116945018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116948916 116948997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116951909 116952006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116954042 116954210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116960136 116960222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGTCATAGAGGAAGTTAATTTCATGCAGAACCATCTTGAAATAGAGAAGACTTGTCGAGAAAGTGCTG
AAGCTTTGGCAACAAAGCTAAATAAAGAAAATAAAACGTTGAAAAGAATCAGCATGTTGTACATGGCCAA
GCTGGGACCAGATGTAATAACTGAAGAGATAAACATTGATGATGAAGATTCGACTACAGACACAGACGGT
GCCGCCGAGACTTGTGTCTCAGTACAGTGTCAGAAGCAAATTAAAGAACTTCGAGATCAAATTGTATCTG
TTCAGGAGGAAAAGAAGATTTTAGCCATTGAGCTGGAAAATCTCAAGAGCAAACTCGTAGAAGTAATTGA
AGAAGTAAATAAAGTTAAACAAGAAAAGACTGTTTTAAATTCAGAAGTTCTTGAACAGAGAAAAGTCTTA
GAAAAATGCAATAGAGTGTCCATGTTAGCTGTAGAAGAGTATGAGGAGATGCAAGTAAACCTGGAGCTGG
AGAAGGACCTTCGAAAGAAAGCAGAGTCATTTGCACAAGAGATGTTCATTGAGCAAAACAAGCTAAAGAG
ACAAAGCCACCTTCTGCTGCAGAGCTCCATCCCTGATCAGCAGCTTTTGAAAGCTTTAGACGAAAATGCA
AAACTCACCCAGCAACTTGAAGAAGAGAGAATTCAGCATCAACAAAAGGTCAAAGAATTAGAAGAGCAAC
TAGAAAATGAAACACTCCACAAAGAAATACACAACCTCAAACAGCAACTGGAGCTTCTAGAGGAAGATAA
AAAGGAATTGGAATTGAAATATCAGAATTCTGAAGAGAAAGCCAGAAATTTAAAGCACTCTGTTGATGAA
CTCCAGAAACGAGTGAACCAGTCTGAGAATTCAGTACCTCCACCACCTCCTCCTCCACCACCACTTCCCC
CTCCACCTCCCAATCCTATCCGATCCCTCATGTCCATGATCCGGAAACGATCCCACCCCAGTGGCAGTGG
TGCTAAGAAAGAAAAGGCAACTCAACCAGAAACAACTGAAGAAGTCACAGATCTAAAGAGGCAAGCAGTT
GAAGAGATGATGGATAGAATTAAAAAGGGAGTTCATCTTAGACCCGTTAATCAGACAGCCAGACCGAAGA
CAAAGCCAGAATCTTCGAAAGGCTGCGAAAGTGCAGTGGATGAACTAAAAGGAATACTGGGGACACTTAA
CAAATCCACTAGTTCAAGAAGCTTAAAATCCCTTGACCCTGAAAACAGTGAAACTGAGTTAGAAAGGATT
TTGCGTCGCAGAAAGGTGACAGCAGAAGCAGATAGCAGTAGTCCAACTGGGATATTAGCCACCTCAGAGT
CCAAATCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAAACAGCCTTGAACAAGAAAACTCTGGA
GGCAGAATTCAACAGCCCGTCCCCCCCAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGC
ACAAGTTCCAAGGTTACGTTTCAATAA

Translation (498 aa):
MVIEEVNFMQNHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINIDDEDSTTDTDG
AAETCVSVQCQKQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEEVNKVKQEKTVLNSEVLEQRKVL
EKCNRVSMLAVEEYEEMQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSSIPDQQLLKALDENA
KLTQQLEEERIQHQQKVKELEEQLENETLHKEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDE
LQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAV
EEMMDRIKKGVHLRPVNQTARPKTKPESSKGCESAVDELKGILGTLNKSTSSRSLKSLDPENSETELERI
LRRRKVTAEADSSSPTGILATSESKSMPVLGSVSSVTKTALNKKTLEAEFNSPSPPTPEPGEGPRKLEGC
TSSKVTFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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