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Report for CCDS58228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58228.1 Public Homo sapiens 12 ASIC1 24 110 108 CCDS HistoryNCBI Gene:41Re-query CCDS DB by CCDS ID:58228.1Re-query CCDS DB by GeneID:41See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58228.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000552438.5 ENSP00000450247.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552438.5Link to Ensembl Protein Viewer:ENSP00000450247.1Re-query CCDS DB by Nucleotide ID:ENST00000552438Re-query CCDS DB by Protein ID:ENSP00000450247
Original member NCBI NM_001256830.1 NP_001243759.1 Updated not alive Link to Nucleotide Sequence:NM_001256830.1Link to Protein Sequence:NP_001243759.1Re-query CCDS DB by Nucleotide ID:NM_001256830Re-query CCDS DB by Protein ID:NP_001243759
Current member NCBI NM_001256830.2 NP_001243759.1 Accepted alive Link to Nucleotide Sequence:NM_001256830.2Link to Protein Sequence:NP_001243759.1Re-query CCDS DB by Nucleotide ID:NM_001256830Re-query CCDS DB by Protein ID:NP_001243759Link to BLAST:NP_001243759.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243759.1 562 P78348-3 562 100% 0 0

Chromosomal Locations for CCDS 58228.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 50073585 50074244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50077213 50077363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50078000 50078127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50078421 50078577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50078924 50078980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50079902 50080055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50080498 50080589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50081102 50081181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50081260 50081364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50081545 50081649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGCCCATCCAGATCTTCTGCTCCATGTCATTCTCCTCTGGAGAGGAAGCCCCAGGGCCCTTGGGAGATA
TTTGGGGTCCCCACCACCATCAGCAGCAGCAGGACATCTCAGAATCGGAAGAGGAGGAAGAAGAGAAGGA
AAAGGAGGCAGTGAGGAAGGAGGCCAGTGAGGGGCATTCACCCATGGACTTGGTGGCCTTTGCCAACAGC
TGCACCCTCCATGGCACCAACCACATTTTTGTGGAGGGGGGTCCAGGGCCAAGGCAGGTGCTGTGGGCGG
TGGCCTTTGTCCTGGCACTGGGTGCCTTCCTGTGCCAGGTAGGGGACCGCGTTGCTTATTACCTCAGCTA
CCCACACGTGACCCTTCTAAACGAAGTGGCCACCACGGAGCTGGCCTTCCCGGCAGTCACCCTCTGCAAC
ACTAATGCTGTGCGGCTGTCCCAGCTCAGCTACCCTGACTTGCTTTATTTGGCCCCCATGCTGGGACTGG
ATGAAAGTGATGACCCCGGGGTGCCCCTCGCTCCACCGGGCCCTGAGGCCTTCTCTGGGGAGCCCTTTAA
CCTGCACCGCTTCTACAATCGCTCCTGCCACCGGCTGGAGGACATGCTGCTCTATTGCTCCTACCAAGGG
GGACCCTGCGGCCCTCACAACTTCTCAGTGGTCTTCACACGCTATGGAAAGTGCTACACGTTCAACTCGG
GCCGAGATGGGCGGCCGCGGCTGAAGACCATGAAGGGTGGGACGGGCAATGGGCTGGAAATCATGCTGGA
CATCCAGCAGGACGAGTACCTGCCTGTGTGGGGGGAGACTGACGAGACGTCCTTCGAAGCAGGCATCAAA
GTGCAGATCCATAGTCAGGATGAACCTCCTTTCATCGACCAGCTGGGCTTTGGCGTGGCCCCAGGCTTCC
AGACCTTTGTGGCCTGCCAGGAGCAGCGGCTCATCTACCTGCCCCCACCCTGGGGCACCTGCAAAGCTGT
TACCATGGACTCGGATTTGGATTTCTTCGACTCCTACAGCATCACTGCCTGCCGCATCGACTGTGAGACG
CGCTACCTGGTGGAGAACTGCAACTGCCGCATGGTGCACATGCCAGGGGATGCCCCATACTGTACTCCAG
AGCAGTACAAGGAGTGTGCAGATCCTGCTCTGGACTTCCTGGTGGAGAAGGACCAGGAGTACTGCGTGTG
TGAAATGCCTTGCAACCTGACCCGCTATGGCAAAGAGCTGTCCATGGTCAAGATCCCCAGCAAAGCCTCA
GCCAAGTACCTGGCCAAGAAGTTCAACAAATCTGAGCAATACATAGGGGAGAACATCCTGGTGCTGGACA
TTTTCTTTGAAGTCCTCAACTATGAGACCATTGAACAGAAGAAGGCCTATGAGATTGCAGGGCTCCTGGG
TGACATCGGGGGCCAGATGGGGCTGTTCATCGGGGCCAGCATCCTCACGGTGCTGGAGCTCTTTGACTAC
GCCTACGAGGTCATTAAGCACAAGCTGTGCCGACGAGGAAAATGCCAGAAGGAGGCCAAAAGGAGCAGTG
CGGACAAGGGCGTGGCCCTCAGCCTGGACGACGTCAAAAGACACAACCCGTGCGAGAGCCTTCGGGGCCA
CCCTGCCGGGATGACATACGCTGCCAACATCCTACCTCACCATCCGGCCCGAGGCACGTTCGAGGACTTT
ACCTGCTGA

Translation (562 aa):
MPIQIFCSMSFSSGEEAPGPLGDIWGPHHHQQQQDISESEEEEEEKEKEAVRKEASEGHSPMDLVAFANS
CTLHGTNHIFVEGGPGPRQVLWAVAFVLALGAFLCQVGDRVAYYLSYPHVTLLNEVATTELAFPAVTLCN
TNAVRLSQLSYPDLLYLAPMLGLDESDDPGVPLAPPGPEAFSGEPFNLHRFYNRSCHRLEDMLLYCSYQG
GPCGPHNFSVVFTRYGKCYTFNSGRDGRPRLKTMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIK
VQIHSQDEPPFIDQLGFGVAPGFQTFVACQEQRLIYLPPPWGTCKAVTMDSDLDFFDSYSITACRIDCET
RYLVENCNCRMVHMPGDAPYCTPEQYKECADPALDFLVEKDQEYCVCEMPCNLTRYGKELSMVKIPSKAS
AKYLAKKFNKSEQYIGENILVLDIFFEVLNYETIEQKKAYEIAGLLGDIGGQMGLFIGASILTVLELFDY
AYEVIKHKLCRRGKCQKEAKRSSADKGVALSLDDVKRHNPCESLRGHPAGMTYAANILPHHPARGTFEDF
TC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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