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Report for CCDS58446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58446.1 Public Homo sapiens 16 PRRT2 24 110 108 CCDS HistoryNCBI Gene:112476Re-query CCDS DB by CCDS ID:58446.1Re-query CCDS DB by GeneID:112476See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58446.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300797.7 ENSP00000300797.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000300797.7Link to Ensembl Protein Viewer:ENSP00000300797.6Re-query CCDS DB by Nucleotide ID:ENST00000300797Re-query CCDS DB by Protein ID:ENSP00000300797
Original member Current member EBI ENST00000636131.1 ENSP00000490390.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636131.1Link to Ensembl Protein Viewer:ENSP00000490390.1Re-query CCDS DB by Nucleotide ID:ENST00000636131Re-query CCDS DB by Protein ID:ENSP00000490390
Original member Current member EBI ENST00000647876.1 ENSP00000498021.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647876.1Link to Ensembl Protein Viewer:ENSP00000498021.1Re-query CCDS DB by Nucleotide ID:ENST00000647876Re-query CCDS DB by Protein ID:ENSP00000498021
Original member Current member NCBI NM_001256443.2 NP_001243372.1 Accepted alive Link to Nucleotide Sequence:NM_001256443.2Link to Protein Sequence:NP_001243372.1Re-query CCDS DB by Nucleotide ID:NM_001256443Re-query CCDS DB by Protein ID:NP_001243372Link to BLAST:NP_001243372.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243372.1 299 Q7Z6L0-3 299 100% 0 0

Chromosomal Locations for CCDS 58446.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 29813055 29813954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGGCAGCCAGCAGCTCTGAGATCTCTGAGATGAAGGGGGTTGAGGAGAGTCCCAAGGTTCCAGGCGAAG
GGCCTGGCCATTCTGAAGCTGAAACTGGCCCTCCCCAGGTCCTAGCAGGGGTACCAGACCAGCCAGAGGC
CCCGCAGCCAGGTCCAAACACCACTGCGGCCCCTGTGGACTCAGGGCCCAAGGCTGGGCTGGCTCCAGAA
ACCACAGAGACCCCGGCTGGGGCCTCAGAAACAGCCCAGGCCACAGACCTCAGCTTAAGCCCAGGAGGGG
AATCAAAGGCCAACTGCAGCCCCGAAGACCCATGCCAAGAAACAGTGTCCAAACCAGAAGTGAGCAAAGA
GGCCACTGCAGACCAGGGGTCCAGGCTGGAGTCTGCAGCCCCACCTGAACCAGCCCCAGAGCCTGCTCCC
CAACCAGACCCCCGGCCAGATTCCCAGCCTACCCCCAAGCCAGCCCTTCAACCAGAGCTCCCTACCCAGG
AGGACCCCACCCCTGAGATTCTGTCTGAGAGTGTAGGGGAAAAGCAAGAGAATGGGGCAGTGGTGCCCCT
GCAGGCTGGTGATGGGGAAGAGGGCCCAGCCCCTGAGCCTCACTCACCACCCTCAAAAAAATCCCCCCCA
GCCAATGGGGCCCCCCCCCGAGTGCTGCAGCAGCTGGTTGAGGAGGATCGAATGAGAAGGGCACACAGTG
GGCATCCAGGATCTCCCCGAGGTAGCCTGAGCCGCCACCCCAGCTCCCAGTTGGCAGGTCCTGGGGTGGA
GGGGGGTGAAGGCACCCAGAAACCTCGGGACTACATCATCCTTGCCATCCTGTCCTGCTTCTGCCCCATG
TGGCCTGTCAACATCGTGGCCTTCGCTTATGCTGTCATGGTGAGCCCCATGGGACCCTAG

Translation (299 aa):
MAASSSEISEMKGVEESPKVPGEGPGHSEAETGPPQVLAGVPDQPEAPQPGPNTTAAPVDSGPKAGLAPE
TTETPAGASETAQATDLSLSPGGESKANCSPEDPCQETVSKPEVSKEATADQGSRLESAAPPEPAPEPAP
QPDPRPDSQPTPKPALQPELPTQEDPTPEILSESVGEKQENGAVVPLQAGDGEEGPAPEPHSPPSKKSPP
ANGAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILAILSCFCPM
WPVNIVAFAYAVMVSPMGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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