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Report for CCDS58499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58499.1 Public Homo sapiens 17 OR1D5 24 110 108 CCDS HistoryNCBI Gene:8386Re-query CCDS DB by CCDS ID:58499.1Re-query CCDS DB by GeneID:8386See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58499.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000575751.1 ENSP00000459028.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000575751.1Link to Ensembl Protein Viewer:ENSP00000459028.1Re-query CCDS DB by Nucleotide ID:ENST00000575751Re-query CCDS DB by Protein ID:ENSP00000459028
Original member Current member NCBI NM_014566.1 NP_055381.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014566.1Link to Protein Sequence:NP_055381.1Re-query CCDS DB by Nucleotide ID:NM_014566Re-query CCDS DB by Protein ID:NP_055381Link to BLAST:NP_055381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055381.1 312 P58170 312 100% 0 0

Chromosomal Locations for CCDS 58499.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 3062669 3063607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGATGGAGATAACCAGAGTGAGAACTCACAGTTCCTTCTCCTGGGGATCTCAGAGAGTCCTGAGCAGC
AGCGGATCCTGTTTTGGATGTTCCTGTCCATGTACCTGGTCACGGTGCTGGGAAATGTGCTCATCATCCT
GGCCATCAGCTCTGATTCCCACCTGCACACCCCCATGTACTTCTTCCTGGCCAACCTCTCCTTCACTGAC
CTCTTCTTTGTCACCAACACAATCCCCAAGATGCTGGTGAACTTCCAGTCCCAGAACAAAGCCATCTCCT
ATGCAGGGTGTCTGACACAGCTCTACTTCCTGGTCTCCTTGGTGACCCTGGACAACCTCATCCTGGCCGT
GATGGCGTATGATCGCTATGTGGCCACCTGCTGCCCCCTCCACTATGTCACAGCCATGAGCCCTGGGCTC
TGTGTCTTGCTCCTCTCCTTGTGTTGGGGGCTGTCTGTTCTCTATGGCCTCCTCCTCACCTTCCTCCTGA
CCAGGGTGACCTTCTGTGGGCCTCGAGAGATCCACTACCTCTTCTGTGACATGTACATCCTGCTGTGGCT
GGCATGTTCCAACACCCACATCATTCACACAGCGTTGATTGCCACTGGCTGCTTCATCTTCCTCACCCCC
TTAGGGTTCATGACCACATCCTATGTACGTATTGTCAGAACCATCCTTCAAATGCCCTCGGCCTCTAAGA
AATACAAAACCTTCTCTACCTGTGCCTCCCATTTGGGTGTGGTCTCCCTCTTTTATGGGACGCTTGCTAT
GGTGTACCTGCAGCCCCTCCATACCTACTCCATGAAGGACTCAGTAGCCACAGTGATGTATGCTGTGCTG
ACACCTATGATGAACCCTTTCATCTACAGGCTGAGGAACAAAGACATGCATGGGGCTCCGGGAAGAGTCC
TATGGAGACCCTTTCAGAGGCCTAAATGA

Translation (312 aa):
MDGDNQSENSQFLLLGISESPEQQRILFWMFLSMYLVTVLGNVLIILAISSDSHLHTPMYFFLANLSFTD
LFFVTNTIPKMLVNFQSQNKAISYAGCLTQLYFLVSLVTLDNLILAVMAYDRYVATCCPLHYVTAMSPGL
CVLLLSLCWGLSVLYGLLLTFLLTRVTFCGPREIHYLFCDMYILLWLACSNTHIIHTALIATGCFIFLTP
LGFMTTSYVRIVRTILQMPSASKKYKTFSTCASHLGVVSLFYGTLAMVYLQPLHTYSMKDSVATVMYAVL
TPMMNPFIYRLRNKDMHGAPGRVLWRPFQRPK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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