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Report for CCDS5852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5852.1 Public Homo sapiens 7 IFT56 24 110 108 CCDS HistoryNCBI Gene:79989Re-query CCDS DB by CCDS ID:5852.1Re-query CCDS DB by GeneID:79989See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000464848.5 ENSP00000419279.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000464848.5Link to Ensembl Protein Viewer:ENSP00000419279.1Re-query CCDS DB by Nucleotide ID:ENST00000464848Re-query CCDS DB by Protein ID:ENSP00000419279
Original member Current member NCBI NM_024926.4 NP_079202.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024926.4Link to Protein Sequence:NP_079202.2Re-query CCDS DB by Nucleotide ID:NM_024926Re-query CCDS DB by Protein ID:NP_079202Link to BLAST:NP_079202.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079202.2 554 A0AVF1-1 554 100% 0 0

Chromosomal Locations for CCDS 5852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 139133858 139133860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139134655 139134792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139137847 139137939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139139890 139140004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139142256 139142305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139147145 139147290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139148206 139148377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139160948 139161022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139165132 139165234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139166840 139166895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139168344 139168397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139169289 139169352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139178214 139178302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139178515 139178598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139179574 139179643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139181092 139181198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139187406 139187539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139189321 139189432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGATGCTTTCAAGGGCCAAACCTGCTGTAGGCAGAGGCGTACAGCACACTGACAAAAGAAAGAAGAAAG
GTAGGAAGATTCCAAAACTAGAGGAGCTACTTTCAAAAAGAGATTTCACTGGAGCTATTACCCTGTTGGA
GTTCAAACGTCATGTTGGGGAAGAAGAAGAGGATACTAATTTGTGGATTGGATATTGTGCCTTTCACCTG
GGTGACTACAAGAGAGCTCTGGAGGAATACGAAAATGCTACAAAAGAGGAAAATTGTAATTCTGAAGTCT
GGGTGAACCTAGCTTGCACCTACTTCTTTCTTGGGATGTATAAACAAGCTGAAGCAGCTGGATTTAAAGC
TTCAAAAAGCCGACTCCAAAACCGCCTCCTCTTCCACTTGGCTCACAAGTTTAATGATGAGAAAAAATTG
ATGAGCTTTCATCAAAATCTTCAGGATGTCACAGAAGATCAACTCAGTTTGGCCTCAATCCACTATATGC
GATCTCACTACCAAGAAGCTATAGATATATATAAGCGAATACTGCTAGATAACAGGGAATACCTTGCCCT
TAATGTTTATGTGGCCCTCTGCTACTACAAGTTGGATTACTATGATGTGTCTCAAGAAGTTTTGGCTGTT
TACCTTCAGCAAATTCCTGATAGTACCATCGCACTCAATCTTAAAGCCTGTAACCATTTTCGCCTTTACA
ATGGCAGAGCAGCTGAGGCAGAACTCAAAAGCTTGATGGACAATGCTTCTTCATCCTTTGAATTTGCTAA
AGAACTCATCAGGCACAATCTGGTTGTTTTCCGAGGAGGTGAAGGGGCTTTGCAGGTTTTACCTCCCCTA
GTTGATGTCATTCCTGAAGCTAGGCTAAACTTGGTGATTTACTACCTTCGTCAAGATGATGTACAAGAAG
CTTATAACTTAATTAAGGATCTGGAACCTACTACTCCTCAGGAGTATATTCTCAAAGGAGTGGTCAATGC
AGCCCTTGGCCAGGAAATGGGTTCAAGGGATCATATGAAAATTGCCCAGCAGTTCTTCCAGTTGGTGGGA
GGATCAGCTAGTGAATGTGATACAATACCAGGGAGGCAGTGCATGGCTTCCTGTTTCTTCCTGCTTAAGC
AATTTGATGATGTTTTGATTTACCTCAACTCATTTAAGAGTTACTTCTATAATGATGACATCTTTAACTT
TAATTATGCCCAAGCCAAAGCTGCAACAGGCAATACCAGTGAGGGCGAAGAGGCGTTCCTCTTGATCCAA
AGTGAGAAGATGAAAAATGATTACATTTACCTCAGCTGGTTAGCTCGGTGCTATATTATGAATAAGAAAC
CAAGACTAGCCTGGGAACTTTATCTTAAGATGGAAACCTCCGGCGAGTCCTTCAGTCTCTTACAGCTCAT
TGCTAATGACTGCTACAAGATGGGCCAGTTTTACTATTCTGCCAAAGCTTTTGATGTCCTTGAGAGGCTG
GATCCTAACCCTGAATATTGGGAAGGCAAACGGGGTGCCTGTGTGGGCATTTTCCAGATGATCATAGCTG
GGAGAGAACCCAAAGAGACCCTTCGAGAAGTGCTCCATTTACTGAGAAGCACAGGTAACACCCAAGTAGA
ATACATGATCCGGATCATGAAGAAATGGGCCAAAGAAAACAGAGTGTCCATCTAA

Translation (554 aa):
MMLSRAKPAVGRGVQHTDKRKKKGRKIPKLEELLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHL
GDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQNRLLFHLAHKFNDEKKL
MSFHQNLQDVTEDQLSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAV
YLQQIPDSTIALNLKACNHFRLYNGRAAEAELKSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPL
VDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVG
GSASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEAFLLIQ
SEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERL
DPNPEYWEGKRGACVGIFQMIIAGREPKETLREVLHLLRSTGNTQVEYMIRIMKKWAKENRVSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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