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Report for CCDS58767.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58767.1 Public Homo sapiens 20 VSX1 24 110 108 CCDS HistoryNCBI Gene:30813Re-query CCDS DB by CCDS ID:58767.1Re-query CCDS DB by GeneID:30813See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58767.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429762.7 ENSP00000401690.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429762.7Link to Ensembl Protein Viewer:ENSP00000401690.3Re-query CCDS DB by Nucleotide ID:ENST00000429762Re-query CCDS DB by Protein ID:ENSP00000401690
Original member Current member NCBI NM_001256272.2 NP_001243201.1 Accepted alive Link to Nucleotide Sequence:NM_001256272.2Link to Protein Sequence:NP_001243201.1Re-query CCDS DB by Nucleotide ID:NM_001256272Re-query CCDS DB by Protein ID:NP_001243201Link to BLAST:NP_001243201.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243201.1 301 Q9NZR4-8 301 100% 0 0

Chromosomal Locations for CCDS 58767.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 25071921 25072018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25077685 25077865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25078829 25078952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25079436 25079514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25081673 25082096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGACCGGCCGGGACTCGCTTTCCGACGGGCGCACTAGCAGCAGGGCGCTGGTGCCTGGCGGTTCCCCTA
GGGGCTCGCGCCCCCGGGGCTTCGCCATCACGGACCTGCTGGGCTTGGAGGCCGAGCTGCCGGCGCCCGC
TGGCCCAGGACAGGGATCTGGCTGCGAGGGTCCGGCAGTCGCGCCGTGCCCGGGCCCGGGGCTTGACGGC
TCCAGCCTGGCGCGTGGGGCCCTACCGCTGGGACTCGGCCTCCTCTGTGGCTTCGGCACGCAGCCGCCGG
CGGCCGCTCGAGCACCCTGCCTGCTCCTAGCGGACGTGCCGTTCCTGCCGCCCAGGGGCCCCGAGCCCGC
TGCCCCGCTGGCTCCCAGCCGTCCGCCGCCTGCGCTCGGCCGCCAGAAGCGCAGCGACAGCGTCTCCACG
TCCGATGAGGACAGCCAGTCTGAAGACAGGAATGACCTAAAGGCATCCCCCACCTTGGGCAAGAGGAAGA
AGCGGCGGCACAGGACAGTTTTCACTGCTCACCAGCTGGAAGAGTTGGAGAAGGCATTCAGCGAGGCCCA
CTACCCTGATGTGTATGCCCGAGAAATGCTGGCTGTGAAAACTGAGCTCCCCGAAGACCGGATACAGGTC
TGGTTTCAAAACCGCAGGGCCAAATGGCGCAAGCGGGAGAAGCGCTGGGGCGGCAGCAGCGTGATGGCCG
AGTACGGGCTGTACGGGGCCATGGTGCGCCACTGCATCCCGCTGCCAGACTCCGTGCTCAACTCCGCCGA
GGGCGGCCTGCTGGGCTCCTGCGCGCCCTGGCTCCTGGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCA
CTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGGTGCCTGATGACCTTCAGCTGA

Translation (301 aa):
MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCPGPGLDG
SSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVST
SDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV
WFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLVQTSAPGGSRS
LDFAGDTQAPQTPWWCLMTFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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