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Report for CCDS58800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58800.1 Public Homo sapiens 22 SEC14L3 24 110 108 CCDS HistoryNCBI Gene:266629Re-query CCDS DB by CCDS ID:58800.1Re-query CCDS DB by GeneID:266629See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58800.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402286.5 ENSP00000385004.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402286.5Link to Ensembl Protein Viewer:ENSP00000385004.1Re-query CCDS DB by Nucleotide ID:ENST00000402286Re-query CCDS DB by Protein ID:ENSP00000385004
Original member Current member EBI ENST00000540910.5 ENSP00000439752.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540910.5Link to Ensembl Protein Viewer:ENSP00000439752.1Re-query CCDS DB by Nucleotide ID:ENST00000540910Re-query CCDS DB by Protein ID:ENSP00000439752
Original member Current member NCBI NM_001257378.2 NP_001244307.1 Accepted alive Link to Nucleotide Sequence:NM_001257378.2Link to Protein Sequence:NP_001244307.1Re-query CCDS DB by Nucleotide ID:NM_001257378Re-query CCDS DB by Protein ID:NP_001244307Link to BLAST:NP_001244307.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244307.1 323 Q9UDX4-3 323 100% 0 0

Chromosomal Locations for CCDS 58800.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30460021 30460142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30461310 30461479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30461555 30461694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30462086 30462192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30464820 30464903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30466334 30466394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30466982 30467077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30468508 30468696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30468789 30468791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGTGATCCAGAAGTACATGCCTGGGGGCCTGTGTGGCTATGACCGTGATGGCTGCCCCGTGTGGTATG
ACATCATTGGGCCACTTGATCCCAAGGGGTTGCTCTTCTCAGTCACCAAGCAGGACCTGCTCAAGACCAA
GATGAGGGACTGTGAGCGCATCCTGCATGAGTGTGACCTGCAGACAGAGAGGCTAGGGAAGAAGATTGAG
ACCATCGTGATGATATTTGACTGTGAGGGCCTGGGACTGAAACACTTCTGGAAACCTCTGGTAGAAGTGT
ACCAGGAGTTCTTTGGCCTCCTTGAAGAGAATTACCCAGAGACCCTGAAGTTCATGCTCATCGTGAAAGC
TACCAAACTGTTCCCTGTGGGCTACAACCTCATGAAGCCATTCCTGAGTGAGGACACTCGCAGGAAAATT
ATTGTGTTGGGAAATAACTGGAAGGAAGGTTTGCTGAAACTCATCAGTCCTGAGGAACTGCCTGCCCAGT
TTGGGGGCACCCTGACTGACCCAGATGGGAACCCCAAATGTTTAACCAAGATTAACTATGGCGGGGAGAT
CCCCAAGTCCATGTACGTGCGGGACCAGGTGAAGACTCAGTACGAGCACTCGGTGCAGATCAACCGCGGC
TCATCACACCAAGTGGAATACGAGATCCTATTTCCAGGCTGCGTTCTCAGGTGGCAGTTCTCATCTGATG
GTGCGGACATCGGCTTCGGAGTTTTCCTGAAGACCAAGATGGGGGAGCGACAGCGGGCAGGGGAGATGAC
AGATGTTCTACCCAGCCAGCGCTATAACGCCCACATGGTGCCCGAGGATGGGAACCTCACCTGCTCAGAG
GCCGGCGTCTATGTCCTACGCTTCGACAACACCTATAGCTTTGTCCACGCCAAGAAGGTCAGCTTCACAG
TGGAGGTCCTGCTCCCTGACGAGGGCATGCAGAAATATGATAAGGAGCTCACCCCTGTCTAG

Translation (323 aa):
MVIQKYMPGGLCGYDRDGCPVWYDIIGPLDPKGLLFSVTKQDLLKTKMRDCERILHECDLQTERLGKKIE
TIVMIFDCEGLGLKHFWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFLSEDTRRKI
IVLGNNWKEGLLKLISPEELPAQFGGTLTDPDGNPKCLTKINYGGEIPKSMYVRDQVKTQYEHSVQINRG
SSHQVEYEILFPGCVLRWQFSSDGADIGFGVFLKTKMGERQRAGEMTDVLPSQRYNAHMVPEDGNLTCSE
AGVYVLRFDNTYSFVHAKKVSFTVEVLLPDEGMQKYDKELTPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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