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Report for CCDS58801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58801.1 Public Homo sapiens 22 SEC14L3 24 110 108 CCDS HistoryNCBI Gene:266629Re-query CCDS DB by CCDS ID:58801.1Re-query CCDS DB by GeneID:266629See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58801.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401751.5 ENSP00000383896.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401751.5Link to Ensembl Protein Viewer:ENSP00000383896.1Re-query CCDS DB by Nucleotide ID:ENST00000401751Re-query CCDS DB by Protein ID:ENSP00000383896
Original member Current member NCBI NM_001257379.2 NP_001244308.1 Accepted alive Link to Nucleotide Sequence:NM_001257379.2Link to Protein Sequence:NP_001244308.1Re-query CCDS DB by Nucleotide ID:NM_001257379Re-query CCDS DB by Protein ID:NP_001244308Link to BLAST:NP_001244308.1
Original member Current member NCBI NM_001257382.2 NP_001244311.1 Accepted alive Link to Nucleotide Sequence:NM_001257382.2Link to Protein Sequence:NP_001244311.1Re-query CCDS DB by Nucleotide ID:NM_001257382Re-query CCDS DB by Protein ID:NP_001244311Link to BLAST:NP_001244311.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244308.1 341 Q9UDX4-2 341 100% 0 0
NP_001244311.1 341 Q9UDX4-2 341 100% 0 0

Chromosomal Locations for CCDS 58801.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30460021 30460142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30461310 30461479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30461555 30461694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30462086 30462192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30464820 30464903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30466334 30466394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30466982 30467077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30468508 30468696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30470019 30470075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGAGTTCCGGAAGACCATGGATATTGACCATATCCTTGATTGGCAGCCCCCAGAGGTGATCCAGAAGT
ACATGCCTGGGGGCCTGTGTGGCTATGACCGTGATGGCTGCCCCGTGTGGTATGACATCATTGGGCCACT
TGATCCCAAGGGGTTGCTCTTCTCAGTCACCAAGCAGGACCTGCTCAAGACCAAGATGAGGGACTGTGAG
CGCATCCTGCATGAGTGTGACCTGCAGACAGAGAGGCTAGGGAAGAAGATTGAGACCATCGTGATGATAT
TTGACTGTGAGGGCCTGGGACTGAAACACTTCTGGAAACCTCTGGTAGAAGTGTACCAGGAGTTCTTTGG
CCTCCTTGAAGAGAATTACCCAGAGACCCTGAAGTTCATGCTCATCGTGAAAGCTACCAAACTGTTCCCT
GTGGGCTACAACCTCATGAAGCCATTCCTGAGTGAGGACACTCGCAGGAAAATTATTGTGTTGGGAAATA
ACTGGAAGGAAGGTTTGCTGAAACTCATCAGTCCTGAGGAACTGCCTGCCCAGTTTGGGGGCACCCTGAC
TGACCCAGATGGGAACCCCAAATGTTTAACCAAGATTAACTATGGCGGGGAGATCCCCAAGTCCATGTAC
GTGCGGGACCAGGTGAAGACTCAGTACGAGCACTCGGTGCAGATCAACCGCGGCTCATCACACCAAGTGG
AATACGAGATCCTATTTCCAGGCTGCGTTCTCAGGTGGCAGTTCTCATCTGATGGTGCGGACATCGGCTT
CGGAGTTTTCCTGAAGACCAAGATGGGGGAGCGACAGCGGGCAGGGGAGATGACAGATGTTCTACCCAGC
CAGCGCTATAACGCCCACATGGTGCCCGAGGATGGGAACCTCACCTGCTCAGAGGCCGGCGTCTATGTCC
TACGCTTCGACAACACCTATAGCTTTGTCCACGCCAAGAAGGTCAGCTTCACAGTGGAGGTCCTGCTCCC
TGACGAGGGCATGCAGAAATATGATAAGGAGCTCACCCCTGTCTAG

Translation (341 aa):
MEFRKTMDIDHILDWQPPEVIQKYMPGGLCGYDRDGCPVWYDIIGPLDPKGLLFSVTKQDLLKTKMRDCE
RILHECDLQTERLGKKIETIVMIFDCEGLGLKHFWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFP
VGYNLMKPFLSEDTRRKIIVLGNNWKEGLLKLISPEELPAQFGGTLTDPDGNPKCLTKINYGGEIPKSMY
VRDQVKTQYEHSVQINRGSSHQVEYEILFPGCVLRWQFSSDGADIGFGVFLKTKMGERQRAGEMTDVLPS
QRYNAHMVPEDGNLTCSEAGVYVLRFDNTYSFVHAKKVSFTVEVLLPDEGMQKYDKELTPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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