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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS58979.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
58979.2 |
Public |
Homo sapiens |
5 |
PCDHGA4 |
24 |
110 |
108 |
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Public Note for CCDS 58979.1 |
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and primate conservation data. |
Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 58979.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENST00000571252.3 |
ENSP00000458570.2 |
MANE Select |
Accepted |
alive |
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NCBI |
NM_018917.4 |
NP_061740.2 |
MANE Select |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_061740.2 |
962 |
Q9Y5G9-1 |
962 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 58979.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2889 nt): ATGCACTTTATTTTGGACCCAGAAGATCCTGGGGCTCCTCAGGCCTCGACAGAGGGAAAACCGAAGCACA GGCGACTCCGCGGCGGGGTTGTAATGGCGGCGCCTCCTGCTCGCCCAGACCACACCCGGCTGCTCCAGAT CTGCCTTCTCCTGGGGGTTCTGGTGGAAATCAGGGCCGAACAGATTCTCTACTCGGTGTTTGAGGAGCAG GAAGAAGGCTCAGTGGTGGGCAACATCGCCAAGGACCTGGGGTTGGCGCCCCGGGAGCTGGCGGAGCGCG GAGTCCGCATCGTCTCCAGAGGTAGGACGCAGCTTTTCGCCCTGAACCCGCGCAGCGGCACCTTGGTCAC CGCGGGTAGGATAGACAGGGAGGAGCTCTGCGACAGATCTCCAAACTGTGTGACAAACCTGGAGATTCTT CTAGAAGATACAGTGAAGATTTTGCGGGTAGAGGTGGAAATAATCGATGTTAATGATAACCCACCCAGTT TTGGGACAGAACAGAGGGAAATAAAAGTTGCTGAAAATGAAAATCCTGGGGCAAGATTTCCTCTTCCTGA AGCTTTTGATCCGGATGTAGGTGTAAACTCCCTGCAGGGTTACCAGCTCAACTCAAACGGTTACTTTTCC CTGGACGTGCAAAGTGGGGCCGATGGGATTAAGTACCCAGAGCTGGTGCTGGAACGCGCTCTAGATCGCG AGGAAGAGGCGGTTCACCACCTCGTTCTCACGGCCTTCGATGGAGGTGACCCGGTTCGCTCTGGCACTGC CAGGATTCTCATAATACTTGTGGATACCAACGATAATGCTCCCGTGTTCACTCAGCCCGAGTACCACGTA AGTGTTCGTGAGAACGTTCCTGTAGGCACTCGGCTACTCACCGTAAAAGCCACTGATCCAGATGAAGGAG CCAATGGAGACGTGACGTATTCTTTCCGGAAAGTAAGAGACAAAATATCACAGCTATTTCAGTTGAATTC TCTGAGTGGGGATATAACAATATTGGGGGGTCTAGATTATGAGGACTCTGGATTCTATGACATAGATGTA GAAGCCCATGATGGGCCTGGTCTCCGAGCTAGAAGCAAGGTACTGGTGACAGTTCTGGATGAAAATGACA ACGCACCAGAAGTCACAGTTACATCTCTCACCAGCTCAGTCCAGGAATCTTCTTCCCCGGGTACAGTAAT TGCACTTTTCAACGTGCATGACAGTGACTCAGGAGGAAATGGCCTAGTCACATGTTCTATTCCAGATAAT CTGCCATTCACACTTGAAAAGACCTATGGAAATTATTATCGGTTGTTGACACACAGAACACTGGACAGGG AAGAAGTCTCAGAATATAACATCACTGTAACTGCCACTGACCAGGGAACTCCTCCACTGTCTACAGAAAC TCATATTTCACTGCAAGTGATGGACATCAATGACAACCCACCCACTTTCCCTCATGCTTCCTACTCTGCT TACATTCCTGAAAACAACCCCAGAGGAGCCTCCATCTTATCTATGACTGCTCAAGACCCTGACAGTGGTG ACAATGCCCGAATCACTTACTCCCTGGCCGAAGACACCTTCCAGGGTGCACCTCTGTCCTCCTATGTCTC CATCAACTCCAATACAGGGATCCTATATGCTCTTTGCTCCTTCGACTATGAGCAGTTTAGAGACCTGCAG CTGCTGATGACAGCCAGTGACAGTGGAGACCCTCCACTCAGCAGCAATGTGTCACTGAGCCTCTTTGTGC TGGACCAGAACGACAATGTCCCTGAGATCCTGTACCCCACCTTCCCTACTGATGGCTCCACTGGTGTGGA GCTGGCACCCCGCTCCGCAGATTCCGGCTACCTGGTGACCAAAGTGGTGGCAGTGGACAGAGACTCAGGT CAGAATGCCTGGCTGTCCTACAGCCTACTCAAGTCCAGCGAGCCGGGACTATTTGCAGTGGGGCTGCACA CAGGCGAGGTGCGCACCGCACGGGCCCTGCTGGACAGAGACGCGCTCAAGCAGAGGCTTGTAGTGGTCGT CCAGGACCATGGCCAGCCCCCTCTCTCGGCCACCGTCACACTCACTGTGGCTGTGGCCGACAGCATCCCA GATGTCCTGGCTGACTTGGGCAGCCTCAAGCCTTCAGCAGACCCAGACGACTCGGGCCTCACACTCTATC TCGTGGTGGCAGTGGCCGCTGTCTCCTGCGTCTTCCTGGCTTTTGTCACGGTGCTGCTAGCACTCAAGCT GAGACGCTGGCACAAGTCACGCCTGCTTCACGCTGAAGGCAGCAGGTTGGCAGGTGTGCCTGCCTCGCAC TTTGTGGGCGTGGACGGGGTTCGGGCTTTCCTGCAGACCTATTCCCACGAGGTCTCCCTCACCGCGGACT CGCGGAAGAGTCACCTGATCTTCTCCCAACCCAGCTATGCAGACACGCTCATCAGCCGGGAGAGTTGTGA GAAAAGCGAGCCTCTTCTGATAACTCAGGATTTACTTGAAACAAAAGGAGACCCTAATCTTCAGCAAGCC CCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATG ACACCGGCACCTGGCCCAACAACCAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAG TGAAGCTGCTGATGGGAGCTCCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGA CCCCAGTTCACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACAC TGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGG CAAGAAGGAGAAGAAGTAA
Translation (962 aa): MHFILDPEDPGAPQASTEGKPKHRRLRGGVVMAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQ EEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEIL LEDTVKILRVEVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFS LDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHV SVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDIDV EAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGGNGLVTCSIPDN LPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSA YIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQ LLMTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSG QNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIP DVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLAGVPASH FVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEPLLITQDLLETKGDPNLQQA PPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYG PQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
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