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Report for CCDS58980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58980.1 Public Homo sapiens 5 PCDHGB3 24 110 108 CCDS HistoryNCBI Gene:56102Re-query CCDS DB by CCDS ID:58980.1Re-query CCDS DB by GeneID:56102See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58980.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000576222.2 ENSP00000461862.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000576222.2Link to Ensembl Protein Viewer:ENSP00000461862.1Re-query CCDS DB by Nucleotide ID:ENST00000576222Re-query CCDS DB by Protein ID:ENSP00000461862
Original member Current member NCBI NM_018924.5 NP_061747.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018924.5Link to Protein Sequence:NP_061747.2Re-query CCDS DB by Nucleotide ID:NM_018924Re-query CCDS DB by Protein ID:NP_061747Link to BLAST:NP_061747.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061747.2 929 Q9Y5G1-1 929 100% 0 0

Chromosomal Locations for CCDS 58980.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141370395 141372809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGGGAAATAGCTCCGGATGGAGGGGCCCAGCAGGGCAGAGGCGAATGCTATTTCTCTTCCTGCTCTCTT
TGTTAGACCAGGCTCTCTCCGAACCGATCCGCTACGCTATTCCCGAGGAGCTGGACAGGGGCTCGCTGGT
AGGGAACCTCGCCAAGGACCTGGGGTTTGGCGTGGGGGATTTACCTACTAGGAACCTGCGGGTTATTGCA
GAGAAGAAATTCTTTACCGTGAGCCCCGAAAATGGGAACTTACTTGTGAGCGACCGTATAGACCGAGAGG
AGATTTGTGGCAAGAAGTCGACGTGTGTTCTGGAATTTGAAATGGTTGCTGAAAAGCCTTTAAACTTTTT
TCATGTAACTGTGCTGATCCAGGATATTAACGACAACCCACCGACCTTTAGCCAAAATATCACTGAGCTG
GAAATCAGCGAACTGGCTCTCACTGGAGCCACATTTGCCCTGGAATCTGCGCAAGATCCTGATGTAGGTG
TCAATTCGCTGCAGCAGTACTACCTCAGCCCTGATCCGCACTTCTCTTTGATTCAGAAGGAGAACCTGGA
TGGCAGTAGGTACCCAGAGCTAGTACTGAAAGCACCCCTGGACAGGGAAGAGCAGCCACATCACCACCTG
GTCCTCACAGCTGTGGATGGGGGCGAGCCCTCCAGAAGCTGTACCACCCAGATCAGGGTAATTGTCGCAG
ATGCAAATGATAACCCCCCAGTATTTACTCAGGACATGTACAGGGTCAATGTTGCAGAGAACCTGCCCGC
TGGCTCCTCCGTATTAAAAGTGATGGCCATTGACATGGATGAGGGCATCAATGCCGAAATCATCTATGCC
TTCATCAATATTGGCAAGGAAGTGAGACAACTGTTCAAGCTGGACAGTAAAACGGGGGAACTCACCACTA
TTGGAGAACTGGACTTTGAAGAGAGAGATAGCTACACAATTGGGGTGGAAGCAAAGGATGGTGGACATCA
CACTGCATATTGTAAAGTACAGATAGATATTTCAGATGAAAATGACAATGCCCCGGAGATAACCCTGGCT
TCTGAATCCCAACATATACAAGAAGATGCTGAGCTGGGGACTGCCGTTGCCCTGATCAAAACACATGATC
TAGATTCTGGATTTAATGGAGAAATCCTATGCCAACTAAAAGGAAACTTCCCCTTTAAAATCGTTCAAGA
TACCAAAAACACATACAGGTTGGTGACAGATGGAGCCCTGGACCGGGAGCAGATCCCAGAATACAATGTG
ACGATCACAGCTACCGACAAAGGCAATCCACCGCTCTCCTCCAGCAAGACCATCACTCTGCACATCCTTG
ATGTCAACGACAACGTTCCCGTTTTCCACCAGGCCTCCTACACCGTGCATGTAGCTGAGAACAATCCGCC
TGGAGCCTCCATTGCGCATGTCAGAGCCTCGGATCCCGACTTGGGACCTAATGGCCTTGTCTCCTACTAC
ATCGTGGCCAGTGACCTGGAGCCGCGGGAGCTGTCGTCCTACGTGTCCGTGAGCGCGCGGAGCGGGGTGG
TGTTCGCGCAGCGAGCCTTCGACCACGAGCAGCTGCGTGCCTTCGAGCTCACTCTGCAGGCCCGCGACCA
GGGCTCGCCTACGCTCAGCGCCAACGTGAGCCTGCGCGTGTTGGTGGACGACCGCAACGACAATGCACCG
CTGGTGCTGTACCCAGCTCTGGGGCCCGAAGGCTCTGCGCTCTTCGATATGGTGCCGCGCTCTGCAGAGC
CTGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGCAGACTCGGGATACAACGCCTGGCTGTCCTACCA
CATTGTGCAGGCCAGCGAGCCCGGGCTGTTCAGCCTGGGCCTGCGCACGGGTGAGGTGCGCACGGCGCGT
ACCTTGGGCGACAGGGAGGCCGCCCGCCAGCGCCTGCTGGTCACTGTGCGTGATGGAGGACAGCAGCCTC
TTTCAGCCACCGTCATGCTGCACCTAATCTTCGCAGATAGCTTGCAAGAGATACAACCTGACCTTAGCGA
CCGCCCCACTCCCTCTGACCCTCAGGCGGAGCTACAGTTTCACCTAGTAGTGGCGTTGGCCTTGATCTCA
GTGCTCTTCCTCCTCGCGGTGATTCTGGCAATCTCCCTGCGCCTGCGATGCTCCTCCAGACCCGCCACTG
AGGGCTACTTTCAGCCTGGTGTCTGCTTCAAGACTGTACCTGGAGTTCTCCCCACCTACAGCGAAAGGAC
TTTGCCTTATTCCTACAATCCGTGTGCTGCCTCACATTCCTCAAACACCGAGTTTAAATTTCTCAATATA
AAGGCTGAAAATGCTGCACCACAAGATCTTCTATGTGATGAAGCCTCTTGGTTTGAAAGTAATGACAATC
CAGAAATGCCTTCTAATTCAGGCAATTTGCAAAAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCA
GGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTT
GACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACCCTGG
GAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGTGCCCGA
CTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAGCGGGATGGC
AAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA

Translation (929 aa):
MGNSSGWRGPAGQRRMLFLFLLSLLDQALSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIA
EKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFSQNITEL
EISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPELVLKAPLDREEQPHHHL
VLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYA
FINIGKEVRQLFKLDSKTGELTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLA
SESQHIQEDAELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV
TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYY
IVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVDDRNDNAP
LVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASEPGLFSLGLRTGEVRTAR
TLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALIS
VLFLLAVILAISLRLRCSSRPATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNI
KAENAAPQDLLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG
KAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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