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Report for CCDS59036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59036.1 Public Homo sapiens 6 SMLR1 24 110 108 CCDS HistoryNCBI Gene:100507203Re-query CCDS DB by CCDS ID:59036.1Re-query CCDS DB by GeneID:100507203See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59036.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541421.2 ENSP00000456026.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000541421.2Link to Ensembl Protein Viewer:ENSP00000456026.1Re-query CCDS DB by Nucleotide ID:ENST00000541421Re-query CCDS DB by Protein ID:ENSP00000456026
Original member Current member NCBI NM_001195597.2 NP_001182526.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195597.2Link to Protein Sequence:NP_001182526.1Re-query CCDS DB by Nucleotide ID:NM_001195597Re-query CCDS DB by Protein ID:NP_001182526Link to BLAST:NP_001182526.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182526.1 107 H3BR10 107 100% 0 0

Chromosomal Locations for CCDS 59036.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 130827414 130827651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130834870 130834955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (324 nt):
ATGCTGAGCAAAGGCCGGAGCCCCAGAAGAAAACAAGTACAGACTCAGAGGAAAGCTGCCCTGGTCCTGA
GTGTGACTCCCATGGTCCCCGTGGGGTCTGTGTGGTTGGCAATGAGCTCTGTGCTGTCAGCTTTCATGAG
GGAGCTCCCTGGCTGGTTCCTGTTCTTTGGGGTCTTCCTCCCCGTGACTTTGCTGCTGCTCCTCCTCATC
GCCTACTTCAGGATCAAACTGATTGAGGTTAATGAAGAACTGTCCCAGAACTGTGATCGCCAACATAATC
CCAAGGATGGCTCTTCCCTGTACCAGAGAATGAAATGGACGTGA

Translation (107 aa):
MLSKGRSPRRKQVQTQRKAALVLSVTPMVPVGSVWLAMSSVLSAFMRELPGWFLFFGVFLPVTLLLLLLI
AYFRIKLIEVNEELSQNCDRQHNPKDGSSLYQRMKWT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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