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Report for CCDS59141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59141.1 Public Homo sapiens 9 PTBP3 24 110 108 CCDS HistoryNCBI Gene:9991Re-query CCDS DB by CCDS ID:59141.1Re-query CCDS DB by GeneID:9991See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 59141.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458258.5 ENSP00000414921.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458258.5Link to Ensembl Protein Viewer:ENSP00000414921.1Re-query CCDS DB by Nucleotide ID:ENST00000458258Re-query CCDS DB by Protein ID:ENSP00000414921
Original member Current member NCBI NM_001244898.1 NP_001231827.1 Accepted alive Link to Nucleotide Sequence:NM_001244898.1Link to Protein Sequence:NP_001231827.1Re-query CCDS DB by Nucleotide ID:NM_001244898Re-query CCDS DB by Protein ID:NP_001231827Link to BLAST:NP_001231827.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231827.1 558 O95758-4 558 100% 0 0

Chromosomal Locations for CCDS 59141.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 112223851 112223983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112224133 112224210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112227411 112227627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112228380 112228472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112231380 112231413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112232099 112232238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112234820 112234897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112250929 112251103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112252678 112252788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112262435 112262599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112268049 112268195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112275844 112276013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112297841 112297916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112332784 112332843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGACGCTTCCCCCTCACCTTTCTCTCTCCCCAAGAAACTTAATGAATTATCTGCCCGTCGGGGATCTG
ATGAGCTTCTTTCTTCTGGCATCATTAACGGACCTTTTACCATGAATAGTTCTACTCCTTCTACAGCTAA
TGGGAATGACAGCAAGAAATTTAAACGAGATAGACCTCCCTGTTCGCCTTCCCGTGTTCTCCATCTTCGA
AAAATTCCATGTGATGTCACCGAAGCAGAGATCATATCATTAGGTCTACCATTTGGCAAAGTAACTAATC
TTTTGATGTTGAAAGGAAAAAGCCAGGCTTTCTTAGAAATGGCTTCTGAGGAAGCTGCCGTTACTATGGT
GAATTATTACACTCCTATTACTCCTCACCTTCGAAGCCAGCCTGTTTATATTCAGTATTCCAATCACAGA
GAACTTAAGACTGACAATCTACCTAATCAAGCTCGAGCCCAAGCTGCACTGCAGGCTGTCAGTGCCGTCC
AATCAGGAAGCCTGGCCCTTTCTGGAGGTCCTTCCAATGAAGGCACAGTCCTACCTGGGCAGAGCCCTGT
GCTTCGAATAATTATTGAAAACCTCTTTTACCCTGTTACCCTGGAAGTTCTTCATCAGATATTTTCTAAA
TTTGGCACAGTCTTGAAGATTATCACCTTTACAAAGAATAATCAGTTTCAAGCCTTGCTTCAGTATGCTG
ACCCAGTAAATGCACATTATGCCAAAATGGCTCTGGATGGCCAGAATATCTATAATGCATGCTGCACTCT
GCGCATTGACTTCTCCAAGCTCACCAGCCTTAATGTGAAATATAATAATGACAAAAGCAGAGACTTCACT
CGCTTAGACCTTCCTACTGGTGATGGCCAGCCATCCCTTGAACCCCCTATGGCTGCTGCTTTTGGTGCAC
CGGGTATAATTTCTTCACCATATGCAGGGGCTGCTGGATTTGCCCCAGCCATTGGATTTCCTCAAGCTAC
AGGTCTATCAGTTCCAGCTGTTCCTGGAGCTCTTGGTCCTCTCACAATCACCTCTTCTGCTGTCACTGGA
AGGATGGCCATTCCTGGGGCTAGTGGTATACCAGGAAATTCTGTTCTACTCGTCACAAATCTCAATCCTG
ATCTTATCACACCACATGGGCTTTTTATCCTATTTGGAGTCTATGGTGATGTACATCGAGTGAAGATTAT
GTTTAATAAGAAAGAAAATGCCTTGGTTCAGATGGCGGATGCAAATCAAGCTCAGCTAGCAATGAACCAT
CTAAGTGGTCAGAGACTTTATGGGAAAGTGCTTCGTGCTACACTGTCCAAACATCAAGCAGTACAGCTTC
CTCGAGAGGGACAAGAAGACCAAGGTCTGACTAAGGATTTCAGCAATAGTCCTTTGCATCGCTTTAAAAA
GCCGGGCTCTAAAAACTTCCAGAATATCTTTCCACCATCAGCCACTCTGCATCTTTCCAACATTCCCCCT
TCTGTTACAGTGGATGATCTGAAGAACCTTTTCATAGAAGCTGGATGTTCAGTGAAGGCTTTTAAATTCT
TTCAGAAAGATCGCAAAATGGCGCTCATTCAATTGGGATCTGTGGAAGAAGCAATTCAGGCCCTCATTGA
GCTTCATAACCATGACCTTGGAGAAAATCACCACCTCAGAGTTTCCTTCTCAAAATCTACAATCTGA

Translation (558 aa):
MDASPSPFSLPKKLNELSARRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLR
KIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHR
ELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSK
FGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFT
RLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTG
RMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH
LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPP
SVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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