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Report for CCDS59175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59175.1 Public Homo sapiens X LRCH2 24 110 108 CCDS HistoryNCBI Gene:57631Re-query CCDS DB by CCDS ID:59175.1Re-query CCDS DB by GeneID:57631See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 59175.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538422.2 ENSP00000439366.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538422.2Link to Ensembl Protein Viewer:ENSP00000439366.1Re-query CCDS DB by Nucleotide ID:ENST00000538422Re-query CCDS DB by Protein ID:ENSP00000439366
Original member Current member NCBI NM_001243963.2 NP_001230892.1 Accepted alive Link to Nucleotide Sequence:NM_001243963.2Link to Protein Sequence:NP_001230892.1Re-query CCDS DB by Nucleotide ID:NM_001243963Re-query CCDS DB by Protein ID:NP_001230892Link to BLAST:NP_001230892.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230892.1 748 Q5VUJ6-2 748 100% 0 0

Chromosomal Locations for CCDS 59175.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 115113216 115113335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115122527 115122604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115122760 115122897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115123080 115123192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115123945 115124002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115130155 115130199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115149827 115149943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115150022 115150070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115156602 115156667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115163676 115163783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115165405 115165463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115165558 115165655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115165841 115165952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115166255 115166342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115170299 115170432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115179427 115179563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115179646 115179751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115184411 115184537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115188226 115188370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115233693 115234041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2247 nt):
ATGGCGGCGAGTCAGGGAGGAGGCGGTAACAGTGGGGGCGGCGGTTGTGGTGGAGGTGGAAGTAGCGGTG
GCTGTGGCACGGCTGGAGGGGGAGGTGGCGGGGCTGGAGGGGGAGGCGGCGGCGGCGGCGGGACCCTGGT
GGTCCCCATCCCGGTACCGACTCTTTTCGGTCAGCCGTTCCCCAACGGGCCGCCGTGGAACCCGGGGAGC
CTGCAGCCTCAGCACACCGTGAGGAGCCTGGACCGGGCCCTGGAAGAGGCGGGCAGCTCCGGCATCCTGA
GCCTCAGTGGTCGGAAACTCCGAGACTTCCCGGGCAGCGGCTACGACCTGACGGACACCACCCAAGCAGA
TCTTTCCAGAAATCGTTTTACAGAAATTCCTTCTGATGTCTGGTTATTTGCACCCCTTGAAACATTAAAT
TTATATCATAATTGCATCAAAACCATTCCTGAAGCCATTAAAAATCTGCAGATGTTAACATACCTTAACA
TTAGCCGAAATCTTTTATCAACATTGCCAAAATACCTATTTGATCTTCCCCTTAAAGTTTTGGTCGTCAG
TAATAATAAACTGGTATCCATTCCAGAAGAAATTGGGAAGTTAAAAGATTTAATGGAATTGGATATTAGC
TGCAATGAGATTCAAGTCCTTCCCCAACAAATGGGAAAATTACATTCACTTAGAGAGCTAAATATAAGAA
GAAATAATCTTCATGTTTTGCCAGATGAATTAGGAGACCTTCCCTTAGTCAAGCTGGATTTCTCTTGTAA
TAAAGTGACCGAAATTCCAGTTTGTTACAGAAAGCTGCATCATTTACAAGTAATAATTTTGGATAACAAT
CCATTGCAAGTACCACCAGCACAGATATGTTTAAAGGGTAAGGTGCACATATTTAAGTACTTAAATATTC
AAGCATGTTGCAGAATGGATAAGAAACCAGATTCCCTGGATCTTCCATCATTGAGTAAACGAATGCCCTC
ACAGCCTCTCACAGACAGTATGGAAGATTTTTATCCAAATAAAAATCATGGCCCTGACTCTGGAATTGGA
AGTGATAATGGAGAGAAACGATTATCCACAACAGAACCATCAGATGATGACACAGTCAGCCTTCATTCTC
AAGTCTCAGAATCAAATAGAGAGCAGACATCAAGAAATGACAGTCACATAATAGGAAGTAAGACTGATTC
TCAGAAAGACCAGGAGGTATATGATTTTGTTGACCCCAACACAGAAGATGTAGCAGTTCCTGAACAGGGA
AATGCACATATTGGATCATTTGTATCATTCTTTAAGGGAAAAGAAAAATGTTCTGAAAAATCTCGGAAAA
ATGAAGAATTAGGAGATGAAAAAAGACTTGAGAAAGAACAGTTACTGGCAGAGGAAGAGGATGATGATTT
GAAGGAAGTAACTGATTTGAGGAAAATAGCTGCTCAGTTATTGCAGCAAGAACAGAAGAACAGGATTCTT
AATCATTCAACTTCTGTGATGAGAAACAAGCCAAAACAAACTGTGGAATGTGAAAAGAGTGTCTCAGCAG
ATGAAGTTAATTCACCATTATCACCCCTCACCTGGCAGCCCTTAGAAAATCAGAAGGATCAAATAGATGA
ACAACCGTGGCCAGAATCTCACCCTATAATCTGGCAGAGTGAAGAAAGGAGGCGGAGCAAACAGATTAGA
AAAGAATATTTCAAGTATAAATCAATGAGGAAGAGTTCAAGTGGCAATGAAAATGATGAGGAATATGACA
GAACTGATGGTTTTTCACACAGTCCCTTTGGCTTGAAGCCTAGATCAGCTTTTAGCCGCTCATCTCGCCA
AGAATATGGGGCAGCAGATCCAGGATTTACAATGAGAAGAAAGATGGAACATTTACGGGAAGAGCGAGAG
CAAATACGACAACTTCGCAACAATCTTGAATCCAGGTTAAAAGTAATTTTGCCTGATGACATTGGAGCTG
CACTGATGGATGGGGTTGTTCTTTGCCATTTAGCCAATCATATAAGGCCACGTTCTGTTGCTAGTATTCA
TGTACCATCACCAGCAGTGCCCAAACTGAGCATGGCAAAATGTCGAAGAAATGTAGAAAATTTTCTTGAT
GCTTGTAAAAAGTTGGGTGTCTCACAGGAAAGACTTTGTTTGCCTCATCATATTTTGGAAGAACGAGGAC
TTGTGAAAGTTGGTGTCACAGTTCAGGCGCTCCTTGAATTACCAACAACCAAGGCATCTCAGCTTTCTGT
GGCTTAA

Translation (748 aa):
MAASQGGGGNSGGGGCGGGGSSGGCGTAGGGGGGAGGGGGGGGGTLVVPIPVPTLFGQPFPNGPPWNPGS
LQPQHTVRSLDRALEEAGSSGILSLSGRKLRDFPGSGYDLTDTTQADLSRNRFTEIPSDVWLFAPLETLN
LYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVVSNNKLVSIPEEIGKLKDLMELDIS
CNEIQVLPQQMGKLHSLRELNIRRNNLHVLPDELGDLPLVKLDFSCNKVTEIPVCYRKLHHLQVIILDNN
PLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDSMEDFYPNKNHGPDSGIG
SDNGEKRLSTTEPSDDDTVSLHSQVSESNREQTSRNDSHIIGSKTDSQKDQEVYDFVDPNTEDVAVPEQG
NAHIGSFVSFFKGKEKCSEKSRKNEELGDEKRLEKEQLLAEEEDDDLKEVTDLRKIAAQLLQQEQKNRIL
NHSTSVMRNKPKQTVECEKSVSADEVNSPLSPLTWQPLENQKDQIDEQPWPESHPIIWQSEERRRSKQIR
KEYFKYKSMRKSSSGNENDEEYDRTDGFSHSPFGLKPRSAFSRSSRQEYGAADPGFTMRRKMEHLREERE
QIRQLRNNLESRLKVILPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLD
ACKKLGVSQERLCLPHHILEERGLVKVGVTVQALLELPTTKASQLSVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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