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Report for CCDS59264.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59264.1 Public Homo sapiens 16 NPIPA5 24 110 108 CCDS HistoryNCBI Gene:100288332Re-query CCDS DB by CCDS ID:59264.1Re-query CCDS DB by GeneID:100288332See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 59264.1
This gene is one of several nuclear pore complex interacting protein (NPIP) gene copies that are present on chromosome 16. There are no full-length transcripts derived from this gene copy in support of this CCDS representation, and thus its exon combination is inferred based on paralogous transcript alignments, e.g., the mRNA AF132984.1.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 59264.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360151.9 ENSP00000433597.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360151.9Link to Ensembl Protein Viewer:ENSP00000433597.1Re-query CCDS DB by Nucleotide ID:ENST00000360151Re-query CCDS DB by Protein ID:ENSP00000433597
Original member Current member NCBI NM_001277325.2 NP_001264254.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001277325.2Link to Protein Sequence:NP_001264254.1Re-query CCDS DB by Nucleotide ID:NM_001277325Re-query CCDS DB by Protein ID:NP_001264254Link to BLAST:NP_001264254.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264254.1 350 E9PKD4-1 350 100% 0 0

Chromosomal Locations for CCDS 59264.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 15363659 15364069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15365429 15365464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15365574 15365634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15366653 15366760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15369712 15369856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15370020 15370119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15373715 15373843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15378232 15378294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGTTTTGTTGCTTAGGATATGAATGGCTGAGCGGAGGCTGTAAAACCTGGCACTCTGCTTGGGTTATCA
ATACTCTGGCTGACCATCGTCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACTTATCATTACTGT
GTTTCTGAGAAGTTATAAATTTGCCATCTCCCTCTGCACAAGTTACCTTTGTGTGTCTTTCCTGAAGACT
ATCTTCCCGTCTCAAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCAGGAGGTCCAACTGCC
GTAGACAGGAAGGAATTAAAATTGTCCTGGAAGACATCTTTACTTTATGGAGACAGGTGGAAACCAAAGT
TCGAGCTAAAATCCGTAAGATGAAGGTGACAACAAAAGTCAACCGTCATGACAAAATCAATGGAAAGAGG
AAGACCGCCAAAGAACATCTGAGGAAACTAAGCATGAAAGAACGTGAGCACGGAGAAAAGGAGAGGCAGG
TGTCAGAGGCAGAGGAAAATGGGAAATTGGATATGAAAGAAATACACACCTACATGGAAATGTTTCAACG
TGCGCAAGCGTTGCGGCGGCGGGCAGAGGACTACTACAGATGCAAAATCACCCCTTCTGCAAGAAAGCCT
CTTTGCAACCGGGTCAGAATGGCGGCAGTGGAGCATCGTCATTCTTCAGGATTGCCCTACTGGCCCTACC
TCACAGCTGAAACTTTAAAAAACAGGATGGGCCACCAGCCACCTCCTCCAACTCAACAACATTCTATAAT
TGATAACTCCCTGAGCCTCAAGACACCTTCCGAGCGTCTGCTCTATCCCCTTCCACCCTCAGCGGATGAT
AATCTCAAGACACCTCCCGAGTGTCTGCTCACTCCCCTTCCACCCTCAGCTCTACCCTCAGCGGATGATA
ATCTCAAGACACCTGCCGAGTGTCTGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCGGATGATAA
TCTCAAGACACCTCCCGAGTGTGTCTGCTCACTCCCCTTCCACCCTCAGCGGATGATAATCTCAAGAAAC
TAA

Translation (350 aa):
MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCTSYLCVSFLKT
IFPSQNGHDGSTDVQQRARRSNCRRQEGIKIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKR
KTAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKP
LCNRVRMAAVEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPSERLLYPLPPSADD
NLKTPPECLLTPLPPSALPSADDNLKTPAECLLTPLPPSAPPSADDNLKTPPECVCSLPFHPQRMIISRN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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