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Report for CCDS59415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59415.1 Public Homo sapiens 19 LIM2 24 110 108 CCDS HistoryNCBI Gene:3982Re-query CCDS DB by CCDS ID:59415.1Re-query CCDS DB by GeneID:3982See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59415.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000596399.2 ENSP00000472090.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000596399.2Link to Ensembl Protein Viewer:ENSP00000472090.2Re-query CCDS DB by Nucleotide ID:ENST00000596399Re-query CCDS DB by Protein ID:ENSP00000472090
Original member Current member NCBI NM_001161748.2 NP_001155220.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001161748.2Link to Protein Sequence:NP_001155220.1Re-query CCDS DB by Nucleotide ID:NM_001161748Re-query CCDS DB by Protein ID:NP_001155220Link to BLAST:NP_001155220.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155220.1 173 P55344-1 173 100% 0 0

Chromosomal Locations for CCDS 59415.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 51380201 51380262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51380505 51380639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51382418 51382567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51387269 51387443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGTACAGCTTCATGGGTGGTGGCCTGTTCTGTGCCTGGGTGGGGACCATCCTCCTGGTGGTGGCCATGG
CA
ACAGACCACTGGATGCAGTACCGGCTGTCAGGGTCCTTCGCCCACCAGGGCCTGTGGCGGTACTGCCT
G
GGCAACAAGTGCTACCTGCAGACAGACAGCATCGCATACTGGAATGCCACCCGGGCCTTCATGATCCTG
TCT
GCCCTATGCGCCATCTCCGGCATCATCATGGGCATCATGGCCTTCGCTCATCAGCCTACCTTCTCCC
GC
ATCTCCCGGCCCTTCTCTGCTGGCATCATGTTTTTTTCCTCAACCCTTTTCGTCGTGTTGGCCTTGGC
C
ATCTACACTGGAGTCACCGTCAGCTTCCTGGGCCGCCGCTTTGGGGACTGGCGCTTTTCCTGGTCCTAC
ATC
CTGGGCTGGGTGGCAGTGCTCATGACGTTCTTCGCAGGGATTTTCTACATGTGCGCCTACCGGGTGC
AT
GAATGCCGGCGCCTGTCTACACCCCGCTGA


Translation (173 aa):
MYSFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSIAYWNATRAFMIL
S
ALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSS
TLFVVLALAIYTGVTVSFLGRRFGDWRFSWSY
I
LGWVAVLMTFFA
GIFYMCAYRVHECRRLSTPR



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser