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Report for CCDS59543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59543.1 Public Mus musculus 10 Rpf2 23 108 98 CCDS HistoryNCBI Gene:67239Re-query CCDS DB by CCDS ID:59543.1Re-query CCDS DB by GeneID:67239See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183309.7 ENSMUSP00000138581.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183309.7Link to Ensembl Protein Viewer:ENSMUSP00000138581.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183309Re-query CCDS DB by Protein ID:ENSMUSP00000138581
Original member Current member NCBI NM_023323.3 NP_075812.3 Accepted alive Link to Nucleotide Sequence:NM_023323.3Link to Protein Sequence:NP_075812.3Re-query CCDS DB by Nucleotide ID:NM_023323Re-query CCDS DB by Protein ID:NP_075812Link to BLAST:NP_075812.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075812.3 306 Q9JJ80 306 100% 0 0

Chromosomal Locations for CCDS 59543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 40223741 40223920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40225297 40225441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40227559 40227661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40233108 40233207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40234822 40234898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40236123 40236204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40239748 40239787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40243856 40243893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40244585 40244717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40246953 40246975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGATGCTTTGGACAAAGTTCTAAAGCCTAAAACTAAAAGGGCTAAGAGATTCCTTGAGAAGAGAGAAC
CGAAACTCACTGAGAACATTAAGAATGCCATGCTGATTAAAGGCGGAAATGCAAATGCAACCGTGACACA
AGTACTCAGAGACATGTATGCACTGAAGAAACCATATGGAGTTCTCTATAAAAAGAAAAATATTACAAGA
CCATTTGAGGATCAGACGTCACTGGAGTTCTTTTCAAAGAAGTCAGACTGCTCTTTATTCATGTTTGGCT
CCCATAACAAGAAGAGGCCAAATAACCTAGTAATAGGTCGTATGTATGACTACCATGTGCTGGATATGAT
TGAATTAGGTATTGAGAAATTTGTGTCTCTAAAAGATATTAAGACTAGTAAGTGCCCCGAGGGAACAAAA
CCGATGTTGATATTTGCTGGTGATGATTTTGATGTAACAGAAGACTTCAGAAGATTAAAAAATCTTCTTA
TTGATTTCTTCAGAGGCCCCACAGTATCGAACGTCCGGCTGGCTGGATTAGAGTATGTTCTGCACTTCAC
TGCACTGAATGGGAAGGTTTACTTCCGAAGCTATAAGCTGCTGTTGAAGAAATCTGGGTGCAGAACACCG
CGAATCGAGCTAGAAGAGATGGGACCATCACTGGACCTGGTCATGAGGAGGACACACCTAGCATCAGATG
ACCTTTATAAACTGTCCATGAAAGTGCCCAAGGCTCTCAAGCCAAAGAAGAGAAAGAATATCTCTCAGGA
TACTTTTGGCACAACATTTGGAAGGATTCATATGCAAAAGCAAGACTTAAGCAAACTACAAACGAGGAAA
ATGAAGGGGTTGAAGAAGCGACCTGCAGAGAATGGAGTAGACGACCAGGGGAAAAAATCAAAGAGAATTA
AGAAAAATTGA

Translation (306 aa):
MDALDKVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKKKNITR
PFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIEKFVSLKDIKTSKCPEGTK
PMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAGLEYVLHFTALNGKVYFRSYKLLLKKSGCRTP
RIELEEMGPSLDLVMRRTHLASDDLYKLSMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQTRK
MKGLKKRPAENGVDDQGKKSKRIKKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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