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Report for CCDS5960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5960.1 Public Homo sapiens 8 DEFA6 24 110 108 CCDS HistoryNCBI Gene:1671Re-query CCDS DB by CCDS ID:5960.1Re-query CCDS DB by GeneID:1671See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5960.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297436.3 ENSP00000297436.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297436.3Link to Ensembl Protein Viewer:ENSP00000297436.2Re-query CCDS DB by Nucleotide ID:ENST00000297436Re-query CCDS DB by Protein ID:ENSP00000297436
Original member Current member NCBI NM_001926.4 NP_001917.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001926.4Link to Protein Sequence:NP_001917.1Re-query CCDS DB by Nucleotide ID:NM_001926Re-query CCDS DB by Protein ID:NP_001917Link to BLAST:NP_001917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001917.1 100 Q01524 100 100% 0 0

Chromosomal Locations for CCDS 5960.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 6924818 6924927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6925843 6926035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (303 nt):
ATGAGAACCCTCACCATCCTCACTGCTGTTCTCCTCGTGGCCCTCCAGGCCAAGGCTGAGCCACTCCAAG
CTGAGGATGATCCACTGCAGGCAAAAGCTTATGAGGCTGATGCCCAGGAGCAGCGTGGGGCAAATGACCA
GGACTTTGCCGTCTCCTTTGCAGAGGATGCAAGCTCAAGTCTTAGAGCTTTGGGCTCAACAAGGGCTTTC
ACTTGCCATTGCAGAAGGTCCTGTTATTCAACAGAATATTCCTATGGGACCTGCACTGTCATGGGTATTA
ACCACAGATTCTGCTGCCTCTGA

Translation (100 aa):
MRTLTILTAVLLVALQAKAEPLQAEDDPLQAKAYEADAQEQRGANDQDFAVSFAEDASSSLRALGSTRAF
TCHCRRSCYSTEYSYGTCTVMGINHRFCCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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