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Report for CCDS59738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59738.1 Public Mus musculus 7 Ppfia1 23 108 98 CCDS HistoryNCBI Gene:233977Re-query CCDS DB by CCDS ID:59738.1Re-query CCDS DB by GeneID:233977See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182226.7 ENSMUSP00000138312.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182226.7Link to Ensembl Protein Viewer:ENSMUSP00000138312.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182226Re-query CCDS DB by Protein ID:ENSMUSP00000138312
Original member Current member NCBI NM_001195086.1 NP_001182015.1 Accepted alive Link to Nucleotide Sequence:NM_001195086.1Link to Protein Sequence:NP_001182015.1Re-query CCDS DB by Nucleotide ID:NM_001195086Re-query CCDS DB by Protein ID:NP_001182015Link to BLAST:NP_001182015.1

Chromosomal Locations for CCDS 59738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 144479039 144479097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144481085 144481250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144481711 144481779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144482260 144482435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144484844 144484941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144485033 144485208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144488691 144488717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144489197 144489259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144491452 144491652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144491742 144491823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144498297 144498390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144498707 144498879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144500252 144500403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144502867 144502896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144504903 144505134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144506071 144506294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144508129 144508264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144510282 144510361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144510874 144510936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144513246 144513377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144514441 144514524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144514872 144514946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144515986 144516120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144517600 144517746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144519149 144519367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144519545 144519646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144519976 144520050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144520625 144520789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144520960 144521061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144552270 144552533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3801 nt):
ATGATGTGCGAGGTGATGCCGACCATTAGTGAAGCAGAAGGCCCTCCAGGAGGAGGTGGGAGCCATGGGT
CAGGCTCCCCTTCACAGCCAGATGCTGATTCGCATTTTGAGCAGCTCATGGTTTCCATGTTGGAAGAACG
GGACCGCCTTCTGGACACACTAAGAGAGACACAAGAAACACTGGCATTAACCCAGGGGAAGTTGCATGAA
GTTGGTCATGAAAGAGATTCTTTGCAGAGGCAGCTCAATACTGCACTTCCACAGGAGTTTGCTGCGCTCA
CGAAGGAACTCAATGTGTGCAGGGAGCAGCTTCTAGAGAGAGAGGAAGAAATCGCCGAGCTGAAGGCAGA
GAGGAACAACACTAGGCTGCTGTTGGAGCACCTAGAGTGCCTTGTCTCCAGGCATGAGCGCTCTCTCCGG
ATGACAGTGGTAAAGAGGCAGGCACAGTCACCTGCAGGCGTGTCCAGTGAGGTGGAAGTGCTGAAAGCCC
TGAAGTCACTGTTTGAACACCACAAAGCCTTGGATGAGAAGGTACGAGAGCGACTACGAGTGGCTCTGGA
GAGGTGCAGCTTGTTAGAAGAGGAGCTGGGTGCCACCCACAAAGAGCTAATGATTCTTAAAGAACAGAAT
AATCAGAAGAAAACACTAACAGATGGACTGCTTGACGGAAACCATGAACAGGAAAGTGCACCAAGCACCA
ACGGCAAGAGATCTTCTGATGGCTCCTTGAGTCATGAGGATCTTGCCAAAGTGCTGGAGCTGCAGGAAGT
CATAGACAGGCAGGCGAGAGAGCAGAGCCAGATGAAGGAGCGCCTGGCCTCCCTGTCCAGTCATGCAGCA
GAACTAGAAGAGGATCTGGACACAGCTAGAAAAGACCTCATCAAGTCTGAAGAGATGAATACGAAACTGC
AGCGAGAAGTCCGTGAAGCAATGGCCCAGAAGGAGGATATGGAAGAGAGAATCACCACCCTTGAGAAACG
CTACCTCGCCGCACAGCGTGAAGCCACGTCTGTGCATGACCTCAATGACAAACTTGAAAATGAAATTGCA
AATAAAGACTCCATGCACCGACAGACAGAAGACAAGAACCGCCAGTTGCAAGAGCGTCTGGAGTTGGCCG
AGCAGAAGCTGCAGCAGACCCTGCGCAAAGCTGAGACGCTGCCAGAGGTGGAGGCTGAGCTGGCCCAGAG
GGTGGCTGCACTCTCCAAGTCTGGTCCTTTGTCTTCTGGGAGTTCAGCTGCTAAGGAAGCAAAACTGTTG
GAGCTTACTTCCAAGCTTAGGAAGGCTGAGGAGAGACATGGCAATATTGAAGAGAGGCTGCGGCAGATGG
AGGCACAGCTGGAGGAGAAAAATCAGGAGCTGCAGCGGGCAAGGCAGAGAGAAAAGATGAACGAGGAACA
TAATAAGCGCCTGTCTGACACTGTGGATAAGTTGCTCTCAGAATCCAATGAGAGGCTGCAGCTGCATCTG
AAGGAGAGAATGGCGGCGCTGGAGGACAAGAATTCTCTACTAAGGGAAGTTGAAAATGCAAAGAAGCAAC
TAGAAGAGACCCAGCATGATAAGGACCAACTTGTCGTGACTATTGAAGCCCTGAAGGCTGAGCTGGAGCA
GATGAGACTGAGAGGTCCTTCACTCCATCATGGCCGACCCCATTTGGGCAGCGTCCCGGACTTCAGGTTC
TCTGTGGCAGACGGACATGTGGATGCTTACAGCACCAGTGCAGTGTTGCGGCGCCCCCAGAAGGGCCGAC
TGGCAGCGCTGCGGGATGAGCCCTCCAAGGTGCAGACCCTCAATGAGCAGGACTGGGAACGGGCCCAACA
AGCCAGCGTCTTGGCAAATGTGGCACAGGCATTTGAGAGTGATGTCGATGTGTCTGATGGTGAAGATGAC
CGAGATACACTGCTCAGCTCAGTTGATCTGCTGTCACCCAGTGGACAGGCTGATGCCCAGACACTGGCCA
TGATGCTTCAGGAACAGCTGGATGCTATCAACAAAGAGATCAGGCTGATACAAGAAGAGAAGGAGAATAC
AGAACAGCGGGCAGAGGAGATCGAGAGCAGAGTGGGCAGTGGAAGCTTGGACAATCTTGGTCGTTTTAGA
TCAATGAGCTCCATTCCCCCCTACCCTGCTTCCTCGCTTGCTGGCTCCTCTCCTCCAGGCAGTGGTCGGT
CCACACCAAGAAGGGTCCCTCACAGTCCTGCCCGGGAGGTGGACAGGCTGGGTGTCATGACTCTGCCTAG
TGACTTAAGGAAGCACCGGAGACAGTTGCCAGCTTCCAGAGAAGAGGTACGAGACGACAAGACGACGATA
AAATGTGAAACCTCTCCCCCCTCCTCCCCGAGGCCCCTGCGCTTAGACAGGATGCACAAGGGCGCACCGC
ACACGGTCAGCCATGAGGACATCAGGGACCTGAGGAACTCCACAGGCTCCCAGGATGGTCCCGTGAGCAA
CCCTAGCAGCAGTAATAGTAGCCAGGACTCCCTCCACAAAGCCCCAAAGAAGAAGGGTATCAAATCCTCC
ATTGGCCGCTTGTTTGGGAAGAAGGAAAAGGGCCGGCCTGGTCCACTGGGCAAGGAGTCACCAGGGCAAG
TTGGTGTTTCAGAGACAGAAAATTCATCTCAAGATGCCCTGGGACTCAGCAAACTGGGAGGACAAGCTGA
GAAAAACCGTAAACTTCAGAAAAAGCACGAGCTGCTGGAGGAGGCCCGCAGGCAAGGCTTGCCTTTTGCA
CAGTGGGATGGGCCCACAGTGGTAGTGTGGTTAGAGCTCTGGGTTGGGATGCCTGCCTGGTATGTGGCTG
CTTGCCGAGCAAATGTCAAGAGTGGTGCCATCATGTCAGCCCTGTCAGACACTGAGATCCAGCGGGAGAT
TGGCATCAGCAACCCCCTGCATAGGCTGAAGCTGCGGCTGGCCATCCAAGAGATAATGTCACTGACTAGC
CCTTCTGCTCCACCCACATCCAGGACGACCACAGGAAATGTCTGGTTGACACATGAAGAGATGGAAACGC
TTACAGCCACGCCACAAACGGAAGACGAGGAGGGAAGCTGGGCTCAGACTCTAGCATATGGGGACATGAA
CCACGAGTGGATCGGCAATGAGTGGCTGCCCAGCCTGGGCCTGCCGCAGTACCGCAGCTACTTTATGGAG
TGCCTTGTAGATGCCCGGATGCTGGACCACTTGACCAAGAAAGACTTGCGAGGGCAGCTGAAGATGGTCG
ACAGCTTCCACAGAAACAGTTTCCAGTGTGGAATTATGTGCCTGAGAAGGCTAAATTATGACCGAAAAGA
ACTGGAAAGAAAAAGAGAAGAGAGTCAGAATGAGACAAGAGATGTGCTTGTGTGGAGCAATGACCGGGTG
ATTCGCTGGATCCTGTCGATTGGCCTTAAAGAGTATGCCAACAACCTAATAGAGAGCGGTGTTCACGGTG
CACTTCTGGCTTTGGACGAGACTTTCGATTTCAGTGCCCTGGCACTCTTGTTACAGATTCCAACACAGAA
TACGCAGGCTCGAGCTGTCTTGGAAAGAGAATTCAACAACCTTTTGATCACGGGGACTGATCGGAGGTTT
GATGAGGATGATGACAAAAGCTTCAGGAGGGCGCCTTCCTGGAGGAAGAAGTTCAGACCAAAGGACATTC
GTGGCTTGGCCTCTGGCTCTGCAGAGACGTTGCCTGCCAACTTCCGGGTCACCTCCTCAATGTCATCTCC
CTCTATGCAGCCAAAGAAGGTTCAGATGGACGGTAGTGTGTCCGGAGCACAGAGGTTGGACTCTGCCACA
GTCAGGACTTACTCCTGCTAG

Translation (1266 aa):
MMCEVMPTISEAEGPPGGGGSHGSGSPSQPDADSHFEQLMVSMLEERDRLLDTLRETQETLALTQGKLHE
VGHERDSLQRQLNTALPQEFAALTKELNVCREQLLEREEEIAELKAERNNTRLLLEHLECLVSRHERSLR
MTVVKRQAQSPAGVSSEVEVLKALKSLFEHHKALDEKVRERLRVALERCSLLEEELGATHKELMILKEQN
NQKKTLTDGLLDGNHEQESAPSTNGKRSSDGSLSHEDLAKVLELQEVIDRQAREQSQMKERLASLSSHAA
ELEEDLDTARKDLIKSEEMNTKLQREVREAMAQKEDMEERITTLEKRYLAAQREATSVHDLNDKLENEIA
NKDSMHRQTEDKNRQLQERLELAEQKLQQTLRKAETLPEVEAELAQRVAALSKSGPLSSGSSAAKEAKLL
ELTSKLRKAEERHGNIEERLRQMEAQLEEKNQELQRARQREKMNEEHNKRLSDTVDKLLSESNERLQLHL
KERMAALEDKNSLLREVENAKKQLEETQHDKDQLVVTIEALKAELEQMRLRGPSLHHGRPHLGSVPDFRF
SVADGHVDAYSTSAVLRRPQKGRLAALRDEPSKVQTLNEQDWERAQQASVLANVAQAFESDVDVSDGEDD
RDTLLSSVDLLSPSGQADAQTLAMMLQEQLDAINKEIRLIQEEKENTEQRAEEIESRVGSGSLDNLGRFR
SMSSIPPYPASSLAGSSPPGSGRSTPRRVPHSPAREVDRLGVMTLPSDLRKHRRQLPASREEVRDDKTTI
KCETSPPSSPRPLRLDRMHKGAPHTVSHEDIRDLRNSTGSQDGPVSNPSSSNSSQDSLHKAPKKKGIKSS
IGRLFGKKEKGRPGPLGKESPGQVGVSETENSSQDALGLSKLGGQAEKNRKLQKKHELLEEARRQGLPFA
QWDGPTVVVWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEIMSLTS
PSAPPTSRTTTGNVWLTHEEMETLTATPQTEDEEGSWAQTLAYGDMNHEWIGNEWLPSLGLPQYRSYFME
CLVDARMLDHLTKKDLRGQLKMVDSFHRNSFQCGIMCLRRLNYDRKELERKREESQNETRDVLVWSNDRV
IRWILSIGLKEYANNLIESGVHGALLALDETFDFSALALLLQIPTQNTQARAVLEREFNNLLITGTDRRF
DEDDDKSFRRAPSWRKKFRPKDIRGLASGSAETLPANFRVTSSMSSPSMQPKKVQMDGSVSGAQRLDSAT
VRTYSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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