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Report for CCDS6023.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
6023.1 |
Public |
Homo sapiens |
8 |
HR |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:55806](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:6023.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:55806](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 8 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 6023.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000312841.9 |
ENSP00000326765.8 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000312841.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000326765.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000312841](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000326765](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_018411.4 |
NP_060881.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_018411.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_060881.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_018411](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_060881](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_060881.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_060881.2 |
1134 |
O43593-2 |
1134 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 6023.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3405 nt): ATGGAGAGTACGCCCAGCTTCCTGAAGGGCACCCCAACCTGGGAGAAGACGGCCCCAGAGAACGGCATCG TGAGACAGGAGCCCGGCAGCCCGCCTCGAGATGGACTGCACCATGGGCCGCTGTGCCTGGGAGAGCCTGC TCCCTTTTGGAGGGGCGTCCTGAGCACCCCAGACTCCTGGCTTCCCCCTGGCTTCCCCCAGGGCCCCAAG GACATGCTCCCACTTGTGGAGGGCGAGGGCCCCCAGAATGGGGAGAGGAAGGTCAACTGGCTGGGCAGCA AAGAGGGACTGCGCTGGAAGGAGGCCATGCTTACCCATCCGCTGGCATTCTGCGGGCCAGCGTGCCCACC TCGCTGTGGCCCCCTGATGCCTGAGCATAGTGGTGGCCATCTCAAGAGTGACCCTGTGGCCTTCCGGCCC TGGCACTGCCCTTTCCTTCTGGAGACCAAGATCCTGGAGCGAGCTCCCTTCTGGGTGCCCACCTGCTTGC CACCCTACCTAGTGTCTGGCCTGCCCCCAGAGCATCCATGTGACTGGCCCCTGACCCCGCACCCCTGGGT ATACTCCGGGGGCCAGCCCAAAGTGCCCTCTGCCTTCAGCTTAGGCAGCAAGGGCTTTTACTACAAGGAT CCGAGCATTCCCAGGTTGGCAAAGGAGCCCTTGGCAGCTGCGGAACCTGGGTTGTTTGGCTTAAACTCTG GTGGGCACCTGCAGAGAGCCGGGGAGGCCGAACGCCCTTCACTGCACCAGAGGGATGGAGAGATGGGAGC TGGCCGGCAGCAGAATCCTTGCCCGCTCTTCCTGGGGCAGCCAGACACTGTGCCCTGGACCTCCTGGCCC GCTTGTCCCCCAGGCCTTGTTCATACTCTTGGCAACGTCTGGGCTGGGCCAGGCGATGGGAACCTTGGGT ACCAGCTGGGGCCACCAGCAACACCAAGGTGCCCCTCTCCTGAGCCGCCTGTCACCCAGCGGGGCTGCTG TTCATCCTACCCACCCACTAAAGGTGGGGGTCTTGGCCCTTGTGGGAAGTGCCAGGAGGGCCTGGAGGGG GGTGCCAGTGGAGCCAGCGAACCCAGCGAGGAAGTGAACAAGGCCTCTGGCCCCAGGGCCTGTCCCCCCA GCCACCACACCAAGCTGAAGAAGACATGGCTCACACGGCACTCGGAGCAGTTTGAATGTCCACGCGGCTG CCCTGAGGTCGAGGAGAGGCCGGTTGCTCGGCTCCGGGCCCTCAAAAGGGCAGGCAGCCCCGAGGTCCAG GGAGCAATGGGCAGTCCAGCCCCCAAGCGGCCACCGGACCCTTTTCCAGGCACTGCAGAACAGGGGGCTG GGGGTTGGCAGGAGGTGCGGGACACATCGATAGGGAACAAGGATGTGGACTCGGGACAGCATGATGAGCA GAAAGGACCCCAAGATGGCCAGGCCAGTCTCCAGGACCCGGGACTTCAGGACATACCATGCCTGGCTCTC CCTGCAAAACTGGCTCAATGCCAAAGTTGTGCCCAGGCAGCTGGAGAGGGAGGAGGGCACGCCTGCCACT CTCAGCAAGTGCGGAGATCGCCTCTGGGAGGGGAGCTGCAGCAGGAGGAAGACACAGCCACCAACTCCAG CTCTGAGGAAGGCCCAGGGTCCGGCCCTGACAGCCGGCTCAGCACAGGCCTCGCCAAGCACCTGCTCAGT GGTTTGGGGGACCGACTGTGCCGCCTGCTGCGGAGGGAGCGGGAGGCCCTGGCTTGGGCCCAGCGGGAAG GCCAAGGGCCAGCCGTGACAGAGGACAGCCCAGGCATTCCACGCTGCTGCAGCCGTTGCCACCATGGACT CTTCAACACCCACTGGCGATGTCCCCGCTGCAGCCACCGGCTGTGTGTGGCCTGTGGTCGTGTGGCAGGC ACTGGGCGGGCCAGGGAGAAAGCAGGCTTTCAGGAGCAGTCCGCGGAGGAGTGCACGCAGGAGGCCGGGC ACGCTGCCTGTTCCCTGATGCTGACCCAGTTTGTCTCCAGCCAGGCTTTGGCAGAGCTGAGCACTGCAAT GCACCAGGTCTGGGTCAAGTTTGATATCCGGGGGCACTGCCCCTGCCAAGCTGATGCCCGGGTATGGGCC CCCGGGGATGCAGGCCAGCAGAAGGAATCAACACAGAAAACGCCCCCAACTCCACAACCTTCCTGCAATG GCGACACCCACAGGACCAAGAGCATCAAAGAGGAGACCCCCGATTCCGCTGAGACCCCAGCAGAGGACCG TGCTGGCCGAGGGCCCCTGCCTTGTCCTTCTCTCTGCGAACTGCTGGCTTCTACCGCGGTCAAACTCTGC TTGGGCCATGAGCGAATACACATGGCCTTCGCCCCCGTCACTCCGGCCCTGCCCAGTGATGACCGCATCA CCAACATCCTGGACAGCATTATCGCACAGGTGGTGGAACGGAAGATCCAGGAGAAAGCCCTGGGGCCGGG GCTTCGAGCTGGCCCGGGTCTGCGCAAGGGCCTGGGCCTGCCCCTCTCTCCAGTGCGGCCCCGGCTGCCT CCCCCAGGGGCTTTGCTGTGGCTGCAGGAGCCCCAGCCTTGCCCTCGGCGTGGCTTCCACCTCTTCCAGG AGCACTGGAGGCAGGGCCAGCCTGTGTTGGTGTCAGGGATCCAAAGGACATTGCAGGGCAACCTGTGGGG GACAGAAGCTCTTGGGGCACTTGGAGGCCAGGTGCAGGCGCTGAGCCCCCTCGGACCTCCCCAGCCCAGC AGCCTGGGCAGCACAACATTCTGGGAGGGCTTCTCCTGGCCTGAGCTTCGCCCAAAGTCAGACGAGGGCT CTGTCCTCCTGCTGCACCGAGCTTTGGGGGATGAGGACACCAGCAGGGTGGAGAACCTAGCTGCCAGTCT GCCACTTCCGGAGTACTGCGCCCTCCATGGAAAACTCAACCTGGCTTCCTACCTCCCACCGGGCCTTGCC CTGCGTCCACTGGAGCCCCAGCTCTGGGCAGCCTATGGTGTGAGCCCGCACCGGGGACACCTGGGGACCA AGAACCTCTGTGTGGAGGTGGCCGACCTGGTCAGCATCCTGGTGCATGCCGACACACCACTGCCTGCCTG GCACCGGGCACAGAAAGACTTCCTTTCAGGCCTGGACGGGGAGGGGCTCTGGTCTCCGGGCAGCCAGGTC AGCACTGTGTGGCACGTGTTCCGGGCACAGGACGCCCAGCGCATCCGCCGCTTTCTCCAGATGGTGCAGG GCCTGGTGAGCACAGTCAGCGTCACTCAGCACTTCCTCTCCCCTGAGACCTCTGCCCTCTCTGCTCAGCT CTGCCACCAGGGACCCAGCCTTCCCCCTGACTGCCACCTGCTTTATGCCCAGATGGACTGGGCTGTGTTC CAAGCAGTGAAGGTGGCCGTGGGGACATTACAGGAGGCCAAATAG
Translation (1134 aa): MESTPSFLKGTPTWEKTAPENGIVRQEPGSPPRDGLHHGPLCLGEPAPFWRGVLSTPDSWLPPGFPQGPK DMLPLVEGEGPQNGERKVNWLGSKEGLRWKEAMLTHPLAFCGPACPPRCGPLMPEHSGGHLKSDPVAFRP WHCPFLLETKILERAPFWVPTCLPPYLVSGLPPEHPCDWPLTPHPWVYSGGQPKVPSAFSLGSKGFYYKD PSIPRLAKEPLAAAEPGLFGLNSGGHLQRAGEAERPSLHQRDGEMGAGRQQNPCPLFLGQPDTVPWTSWP ACPPGLVHTLGNVWAGPGDGNLGYQLGPPATPRCPSPEPPVTQRGCCSSYPPTKGGGLGPCGKCQEGLEG GASGASEPSEEVNKASGPRACPPSHHTKLKKTWLTRHSEQFECPRGCPEVEERPVARLRALKRAGSPEVQ GAMGSPAPKRPPDPFPGTAEQGAGGWQEVRDTSIGNKDVDSGQHDEQKGPQDGQASLQDPGLQDIPCLAL PAKLAQCQSCAQAAGEGGGHACHSQQVRRSPLGGELQQEEDTATNSSSEEGPGSGPDSRLSTGLAKHLLS GLGDRLCRLLRREREALAWAQREGQGPAVTEDSPGIPRCCSRCHHGLFNTHWRCPRCSHRLCVACGRVAG TGRAREKAGFQEQSAEECTQEAGHAACSLMLTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQADARVWA PGDAGQQKESTQKTPPTPQPSCNGDTHRTKSIKEETPDSAETPAEDRAGRGPLPCPSLCELLASTAVKLC LGHERIHMAFAPVTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGPGLRKGLGLPLSPVRPRLP PPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNLWGTEALGALGGQVQALSPLGPPQPS SLGSTTFWEGFSWPELRPKSDEGSVLLLHRALGDEDTSRVENLAASLPLPEYCALHGKLNLASYLPPGLA LRPLEPQLWAAYGVSPHRGHLGTKNLCVEVADLVSILVHADTPLPAWHRAQKDFLSGLDGEGLWSPGSQV STVWHVFRAQDAQRIRRFLQMVQGLVSTVSVTQHFLSPETSALSAQLCHQGPSLPPDCHLLYAQMDWAVF QAVKVAVGTLQEAK
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