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Report for CCDS60494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60494.1 Public Homo sapiens 10 SLC39A12 24 110 108 CCDS HistoryNCBI Gene:221074Re-query CCDS DB by CCDS ID:60494.1Re-query CCDS DB by GeneID:221074See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 60494.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539911.5 ENSP00000440445.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539911.5Link to Ensembl Protein Viewer:ENSP00000440445.1Re-query CCDS DB by Nucleotide ID:ENST00000539911Re-query CCDS DB by Protein ID:ENSP00000440445
Original member Current member NCBI NM_001282734.2 NP_001269663.1 Accepted alive Link to Nucleotide Sequence:NM_001282734.2Link to Protein Sequence:NP_001269663.1Re-query CCDS DB by Nucleotide ID:NM_001282734Re-query CCDS DB by Protein ID:NP_001269663Link to BLAST:NP_001269663.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269663.1 557 Q504Y0-5 557 100% 0 0

Chromosomal Locations for CCDS 60494.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 17961722 17961862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17965483 17965690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17977902 17978074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17981312 17981483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17987479 17987651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17991151 17991303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17993181 17993291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17995656 17995722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18000667 18000825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18003171 18003358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18042705 18042833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGAGTAATAAAGAGTATAAATTTTACCTACACAGCCTACTGAGCCTCAGGCAGGATGAAGATTCCTCTT
TCCTTTCACAGAATGAGACAGAAGATATCTTGGCTTTCACCAGGCAGTACTTTGACACTTCTCAAAGCCA
GTGTATGGAAACCAAAACGCTGCAGAAAAAATCTGGAATAGTGAGCAGTGAAGGTGCTAATGAAAGTACG
CTTCCTCAGTTGGCAGCCATGATCATTACTTTGTCCCTCCAGGGTGTTTGTCTGGGACAAGGAAACTTGC
CTTCCCCAGACTACTTTACAGAATATATTTTCAGTTCCTTGAATCGTACGAATACCCTCCGCCTATCAGA
ACTAGACCAACTCCTCAACACTCTCTGGACCAGAAGTACTTGTATCAAAAATGAGAAAATCCATCAATTT
CAAAGGAAACAAAACAACATAATAACCCATGATCAGGACTATTCTAATTTCTCTTCATCCATGGAAAAAG
AGTCTGAGGATGGTCCAGTTTCCTGGGATCAGACCTGCTTCTCTGCTAGGCAGCTGGTGGAGATATTTCT
ACAGAAGGGCCTCTCACTCATTTCTAAGGAGGACTTTAAGCAAATGAGTCCAGGGATCATCCAGCAGCTC
CTCAGCTGCTCCTGCCACTTACCCAAGGACCAACAAGCAAAGCTGCCACCTACCACTCTGGAGAAATACG
GCTACAGCACGGTGGCTGTCACCCTTCTCACACTGGGCTCCATGCTGGGGACAGCGCTGGTCCTTTTCCA
TAGCTGTGAGGAGAACTACAGGCTTATCTTACAGCTGTTTGTGGGCTTGGCCGTCGGGACACTGTCTGGG
GACGCTCTGCTCCACCTTATCCCTCAGGTTCTTGGTTTACATAAGCAGGAAGCCCCAGAATTTGGGCATT
TCCATGAAAGCAAAGGTCATATTTGGAAACTGATGGGATTAATTGGAGGCATCCATGGATTTTTCTTGAT
AGAAAAATGTTTTATTCTTCTTGTATCACCAAATGACAAGCAGGGCCTGTCATTGGTTAATGGGCACGTG
GGTCATTCCCACCATCTTGCACTCAACTCTGAATTAAGTGACCAGGCAGGCAGAGGCAAATCTGCTTCAA
CTATCCAGTTGAAAAGCCCAGAAGATTCACAGGCAGCTGAAATGCCTATAGGCAGTATGACAGCCTCCAA
CAGAAAATGTAAAGCCATTAGCTTGTTAGCAATCATGATTCTGGTTGGGGACAGCCTGCATAATTTTGCA
GATGGCCTAGCCATAGGAGCAGCCTTCTCATCATCATCCGAGTCAGGAGTGACCACTACGATTGCTATCT
TGTGTCATGAAATCCCACATGAAATGGGAGACTTTGCCGTGCTCTTAAGCTCTGGACTTTCTATGAAGAC
TGCCATCCTGATGAATTTTATAAGCTCCCTAACTGCCTTCATGGGATTATACATTGGCCTTTCCGTGTCA
GCTGATCCATGTGTTCAAGACTGGATCTTCACAGTCACTGCTGGGATGTTCTTATATTTATCCTTGGTTG
AAATGCTTCCTGAAATGACTCATGTTCAAACACAACGACCCTGGATGATGTTTCTCCTGCAAAACTTTGG
ATTGATCCTAGGTTGGCTTTCTCTCCTGCTCTTGGCTATATATGAGCAAAATATTAAAATATAA

Translation (557 aa):
MSNKEYKFYLHSLLSLRQDEDSSFLSQNETEDILAFTRQYFDTSQSQCMETKTLQKKSGIVSSEGANEST
LPQLAAMIITLSLQGVCLGQGNLPSPDYFTEYIFSSLNRTNTLRLSELDQLLNTLWTRSTCIKNEKIHQF
QRKQNNIITHDQDYSNFSSSMEKESEDGPVSWDQTCFSARQLVEIFLQKGLSLISKEDFKQMSPGIIQQL
LSCSCHLPKDQQAKLPPTTLEKYGYSTVAVTLLTLGSMLGTALVLFHSCEENYRLILQLFVGLAVGTLSG
DALLHLIPQVLGLHKQEAPEFGHFHESKGHIWKLMGLIGGIHGFFLIEKCFILLVSPNDKQGLSLVNGHV
GHSHHLALNSELSDQAGRGKSASTIQLKSPEDSQAAEMPIGSMTASNRKCKAISLLAIMILVGDSLHNFA
DGLAIGAAFSSSSESGVTTTIAILCHEIPHEMGDFAVLLSSGLSMKTAILMNFISSLTAFMGLYIGLSVS
ADPCVQDWIFTVTAGMFLYLSLVEMLPEMTHVQTQRPWMMFLLQNFGLILGWLSLLLLAIYEQNIKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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