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Report for CCDS61236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61236.1 Public Homo sapiens 12 CORO1C 24 110 108 CCDS HistoryNCBI Gene:23603Re-query CCDS DB by CCDS ID:61236.1Re-query CCDS DB by GeneID:23603See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 61236.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420959.6 ENSP00000394496.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420959.6Link to Ensembl Protein Viewer:ENSP00000394496.2Re-query CCDS DB by Nucleotide ID:ENST00000420959Re-query CCDS DB by Protein ID:ENSP00000394496
Original member Current member NCBI NM_001105237.2 NP_001098707.1 Accepted alive Link to Nucleotide Sequence:NM_001105237.2Link to Protein Sequence:NP_001098707.1Re-query CCDS DB by Nucleotide ID:NM_001105237Re-query CCDS DB by Protein ID:NP_001098707Link to BLAST:NP_001098707.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098707.1 527 Q9ULV4-3 527 100% 0 0

Chromosomal Locations for CCDS 61236.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 108647403 108647522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108648605 108648850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108648963 108649020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108652272 108652417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108654306 108654410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108657304 108657423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108658738 108658919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108662029 108662158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108678272 108678394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108701124 108701323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108702796 108702949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGTATGGCCCTGGTAGTCAGCTGGGAAAGTCTGGCAATAACAGCTGGGCTAAGGAACGTGGATGCTCAA
TTGCCTGCCAAGGGTCTCTTACTTCAGCCCGGCTACATGCCCCCAGCATTGGAGAGAGGCCACTTTCACA
CATGCGTTGGAAGGACACGATGAGGCGAGTGGTACGACAGAGCAAGTTTCGGCATGTATTTGGGCAAGCG
GTGAAAAATGACCAGTGCTATGATGACATCCGGGTTTCTCGTGTGACCTGGGATAGTTCCTTTTGTGCTG
TCAATCCCAGATTTGTTGCCATAATCATAGAGGCAAGTGGGGGAGGAGCGTTCCTTGTCCTCCCTCTGCA
CAAGACTGGTCGAATTGACAAATCTTACCCTACAGTATGTGGCCACACAGGACCAGTGCTGGACATAGAC
TGGTGCCCACATAACGATCAGGTCATTGCCAGCGGTTCAGAGGACTGCACGGTCATGGTATGGCAGATCC
CAGAAAATGGACTCACCCTTTCCCTGACTGAACCTGTGGTGATTTTGGAAGGCCACTCAAAGAGAGTCGG
CATCGTGGCTTGGCATCCAACGGCCCGCAATGTGCTTCTTAGTGCAGGCTGTGATAATGCCATTATCATC
TGGAATGTGGGAACAGGGGAAGCCCTTATAAACTTGGACGATATGCATTCAGACATGATTTACAATGTGA
GCTGGAACCGGAATGGCAGTCTGATCTGCACAGCTTCCAAAGACAAGAAAGTGAGAGTCATTGATCCCAG
GAAACAAGAGATTGTTGCTGAGAAGGAGAAAGCACATGAAGGAGCAAGACCCATGAGAGCCATCTTCCTG
GCCGATGGCAATGTCTTCACCACTGGGTTCAGCCGCATGAGCGAGCGGCAGCTGGCTCTCTGGAATCCGA
AAAATATGCAGGAACCAATTGCTCTTCATGAGATGGACACTAGCAATGGGGTGTTGCTGCCTTTCTATGA
CCCTGACACCAGCATCATTTACTTATGTGGAAAGGGTGACAGCAGTATTCGCTATTTTGAGATCACGGAT
GAATCCCCGTACGTCCACTACCTCAACACATTCAGCAGCAAGGAGCCTCAGAGAGGGATGGGTTACATGC
CCAAGAGGGGACTTGATGTTAACAAATGTGAGATTGCCAGATTCTTCAAACTTCATGAGAGAAAGTGTGA
ACCTATTATTATGACTGTTCCCAGGAAGTCTGACCTTTTCCAAGATGACCTGTATCCTGACACAGCGGGG
CCAGAGGCCGCGCTGGAGGCAGAAGAGTGGTTCGAAGGCAAGAATGCAGACCCAATCCTCATCTCCTTGA
AGCACGGGTACATTCCAGGCAAAAACAGGGATCTCAAGGTGGTCAAGAAGAACATTCTGGATAGCAAGCC
CACTGCAAACAAGAAGTGCGACCTGATCAGCATCCCCAAGAAAACCACAGACACGGCCAGTGTGCAAAAT
GAAGCCAAGTTGGATGAGATTTTAAAAGAGATCAAATCTATAAAAGACACAATCTGCAATCAAGATGAGC
GTATTTCCAAGTTAGAACAGCAGATGGCAAAGATAGCAGCCTGA

Translation (527 aa):
MYGPGSQLGKSGNNSWAKERGCSIACQGSLTSARLHAPSIGERPLSHMRWKDTMRRVVRQSKFRHVFGQA
VKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGRIDKSYPTVCGHTGPVLDID
WCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEGHSKRVGIVAWHPTARNVLLSAGCDNAIII
WNVGTGEALINLDDMHSDMIYNVSWNRNGSLICTASKDKKVRVIDPRKQEIVAEKEKAHEGARPMRAIFL
ADGNVFTTGFSRMSERQLALWNPKNMQEPIALHEMDTSNGVLLPFYDPDTSIIYLCGKGDSSIRYFEITD
ESPYVHYLNTFSSKEPQRGMGYMPKRGLDVNKCEIARFFKLHERKCEPIIMTVPRKSDLFQDDLYPDTAG
PEAALEAEEWFEGKNADPILISLKHGYIPGKNRDLKVVKKNILDSKPTANKKCDLISIPKKTTDTASVQN
EAKLDEILKEIKSIKDTICNQDERISKLEQQMAKIAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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