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Report for CCDS6163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6163.1 Public Homo sapiens 8 RPS20 24 110 108 CCDS HistoryNCBI Gene:6224Re-query CCDS DB by CCDS ID:6163.1Re-query CCDS DB by GeneID:6224See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6163.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000009589.8 ENSP00000009589.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000009589.8Link to Ensembl Protein Viewer:ENSP00000009589.3Re-query CCDS DB by Nucleotide ID:ENST00000009589Re-query CCDS DB by Protein ID:ENSP00000009589
Original member Current member EBI ENST00000676918.1 ENSP00000503327.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676918.1Link to Ensembl Protein Viewer:ENSP00000503327.1Re-query CCDS DB by Nucleotide ID:ENST00000676918Re-query CCDS DB by Protein ID:ENSP00000503327
Original member Current member EBI ENST00000678683.1 ENSP00000504123.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678683.1Link to Ensembl Protein Viewer:ENSP00000504123.1Re-query CCDS DB by Nucleotide ID:ENST00000678683Re-query CCDS DB by Protein ID:ENSP00000504123
Original member Current member EBI ENST00000678039.1 ENSP00000504154.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678039.1Link to Ensembl Protein Viewer:ENSP00000504154.1Re-query CCDS DB by Nucleotide ID:ENST00000678039Re-query CCDS DB by Protein ID:ENSP00000504154
Original member Current member EBI ENST00000676461.1 ENSP00000504670.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676461.1Link to Ensembl Protein Viewer:ENSP00000504670.1Re-query CCDS DB by Nucleotide ID:ENST00000676461Re-query CCDS DB by Protein ID:ENSP00000504670
Original member Current member NCBI NM_001023.4 NP_001014.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001023.4Link to Protein Sequence:NP_001014.1Re-query CCDS DB by Nucleotide ID:NM_001023Re-query CCDS DB by Protein ID:NP_001014Link to BLAST:NP_001014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014.1 119 P60866-1 119 100% 0 0

Chromosomal Locations for CCDS 6163.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 56073090 56073272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56073695 56073768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56074060 56074159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56074381 56074383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGGCTTTTAAGGATACCGGAAAAACACCCGTGGAGCCGGAGGTGGCAATTCACCGAATTCGAATCACCC
TAACAAGCCGCAACGTAAAATCCTTGGAAAAGGTGTGTGCTGACTTGATAAGAGGCGCAAAAGAAAAGAA
TCTCAAAGTGAAAGGACCAGTTCGAATGCCTACCAAGACTTTGAGAATCACTACAAGAAAAACTCCTTGT
GGTGAAGGTTCTAAGACGTGGGATCGTTTCCAGATGAGAATTCACAAGCGACTCATTGACTTGCACAGTC
CTTCTGAGATTGTTAAGCAGATTACTTCCATCAGTATTGAGCCAGGAGTTGAGGTGGAAGTCACCATTGC
AGATGCTTAA

Translation (119 aa):
MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPC
GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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