NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6205.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6205.1 Public Homo sapiens 8 SLCO5A1 24 110 108 CCDS HistoryNCBI Gene:81796Re-query CCDS DB by CCDS ID:6205.1Re-query CCDS DB by GeneID:81796See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6205.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260126.9 ENSP00000260126.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260126.9Link to Ensembl Protein Viewer:ENSP00000260126.3Re-query CCDS DB by Nucleotide ID:ENST00000260126Re-query CCDS DB by Protein ID:ENSP00000260126
Original member Current member NCBI NM_030958.3 NP_112220.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030958.3Link to Protein Sequence:NP_112220.2Re-query CCDS DB by Nucleotide ID:NM_030958Re-query CCDS DB by Protein ID:NP_112220Link to BLAST:NP_112220.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112220.2 848 Q9H2Y9-1 848 100% 0 0

Chromosomal Locations for CCDS 6205.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69672869 69673326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69676609 69676673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69679378 69679619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69682184 69682343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69705031 69705229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69738040 69738204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69755424 69755641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69761743 69761875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69831767 69832673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2547 nt):
ATGGACGAAGGCACTGGACTGCAGCCCGGGGCGGGAGAGCAGCTGGAGGCGCCGGCCACTGCAGAAGCTG
TCCAAGAGAGGTGCGAGCCGGAGACCCTCAGGTCTAAGAGTTTACCGGTCCTCAGCAGCGCCTCCTGCCG
GCCAAGCCTCAGTCCCACTAGTGGAGACGCCAACCCGGCCTTTGGCTGTGTGGATTCTTCGGGCCACCAG
GAGTTGAAGCAAGGCCCGAACCCGTTGGCCCCCAGTCCCTCTGCCCCGTCCACTTCGGCGGGGCTCGGGG
ACTGTAACCACAGGGTGGACCTCAGCAAAACCTTCTCGGTGTCCTCCGCCTTGGCCATGCTCCAGGAGAG
AAGGTGCCTCTACGTGGTCCTCACGGATTCCCGTTGCTTCCTGGTGTGCATGTGCTTTCTGACCTTCATC
CAGGCGTTAATGGTCTCTGGGTACCTGAGCAGCGTAATTACCACCATTGAAAGGCGCTACAGTCTGAAGA
GTTCCGAGTCGGGGCTGCTGGTCAGCTGCTTTGACATCGGGAACCTGGTGGTGGTGGTGTTCGTCAGCTA
CTTCGGCGGCCGGGGTCGGCGGCCCCTGTGGCTGGCCGTGGGTGGACTCCTCATCGCCTTCGGGGCAGCC
CTCTTCGCCTTACCTCACTTCATCTCGCCCCCCTACCAGATCCAAGAGTTGAACGCCTCGGCCCCCAACG
ACGGCCTGTGTCAGGGTGGCAACTCCACCGCCACTTTGGAGCCTCCGGCCTGTCCGAAGGACTCGGGAGG
AAATAATCACTGGGTCTACGTGGCTTTATTCATTTGCGCGCAGATTCTCATTGGAATGGGCTCCACACCT
ATTTATACCCTGGGACCAACCTACTTAGATGACAATGTCAAGAAAGAAAACTCCTCCTTGTACCTAGCCA
TCATGTATGTCATGGGAGCACTTGGCCCTGCAGTGGGATATTTATTAGGTGGACTTCTTATTGGTTTTTA
TGTTGATCCCAGAAATCCTGTTCACCTTGACCAGAATGACCCTCGTTTCATTGGAAACTGGTGGAGTGGA
TTCCTCCTTTGTGCCATTGCAATGTTTCTTGTGATATTCCCAATGTTTACTTTCCCAAAAAAGCTTCCAC
CTCGACACAAGAAAAAGAAAAAGAAAAAATTTTCTGTTGATGCTGTTAGTGATGACGATGTTCTGAAGGA
GAAATCAAACAACAGTGAACAAGCGGACAAAAAAGTTTCTTCGATGGGATTTGGAAAGGATGTCAGAGAC
CTACCAAGAGCAGCTGTCAGGATCTTAAGCAACATGACATTCCTTTTTGTGAGTTTGTCATACACAGCTG
AGAGTGCCATTGTAACTGCTTTCATTACCTTCATTCCCAAGTTCATCGAGTCACAGTTTGGTATCCCAGC
CTCCAATGCCAGCATCTACACTGGGGTTATTATCGTCCCCAGTGCTGGTGTTGGTATTGTCCTCGGAGGC
TACATTATAAAAAAATTGAAACTTGGTGCCAGAGAATCTGCAAAACTAGCAATGATCTGCAGTGGTGTGT
CTTTACTATGTTTTTCAACCCTATTTATTGTTGGATGTGAAAGCATTAATCTAGGGGGCATAAACATCCC
TTATACAACAGGACCTTCTCTCACCATGCCCCATAGGAATCTGACAGGAAGCTGCAACGTTAATTGTGGT
TGTAAAATACACGAGTATGAGCCAGTCTGTGGATCAGATGGAATTACATACTTTAACCCTTGTCTGGCTG
GCTGTGTTAATAGTGGTAATCTTAGCACTGGGATACGGAATTATACAGAATGCACCTGTGTCCAAAGTCG
CCAAGTGATCACTCCACCCACCGTGGGACAGCGAAGTCAGCTCCGTGTGGTTATTGTCAAGACTTATCTC
AATGAGAACGGCTATGCTGTGTCTGGGAAATGTAAACGGACCTGCAATACTCTTATCCCATTCTTAGTTT
TTCTTTTCATAGTCACCTTCATCACAGCATGTGCCCAACCATCAGCTATCATAGTAACACTCAGGTCCGT
AGAAGATGAGGAGAGACCTTTTGCACTGGGAATGCAGTTTGTTTTGTTGCGAACACTTGCATACATTCCT
ACTCCAATCTACTTTGGAGCAGTCATTGACACCACCTGCATGCTCTGGCAACAGGAATGTGGTGTGCAGG
GTTCTTGCTGGGAGTACAACGTGACGTCGTTTCGTTTTGTGTATTTTGGTTTGGCTGCCGGCCTCAAATT
CGTTGGGTTTATTTTTATTTTTCTGGCCTGGTACTCCATAAAATACAAGGAGGATGGACTGCAGAGGCGG
AGGCAGAGAGAATTTCCCCTGAGCACCGTGAGTGAGAGAGTGGGACACCCCGACAATGCCCGGACTAGAT
CTTGCCCAGCTTTCAGCACCCAGGGAGAATTCCACGAAGAGACTGGCCTGCAAAAAGGGATCCAGTGCGC
AGCACAGACCTACCCGGGGCCCTTCCCAGAAGCAATAAGTTCCTCTGCGGACCCGGGGCTGGAAGAGAGC
CCCGCTGCCTTGGAGCCGCCCTCCTGA

Translation (848 aa):
MDEGTGLQPGAGEQLEAPATAEAVQERCEPETLRSKSLPVLSSASCRPSLSPTSGDANPAFGCVDSSGHQ
ELKQGPNPLAPSPSAPSTSAGLGDCNHRVDLSKTFSVSSALAMLQERRCLYVVLTDSRCFLVCMCFLTFI
QALMVSGYLSSVITTIERRYSLKSSESGLLVSCFDIGNLVVVVFVSYFGGRGRRPLWLAVGGLLIAFGAA
LFALPHFISPPYQIQELNASAPNDGLCQGGNSTATLEPPACPKDSGGNNHWVYVALFICAQILIGMGSTP
IYTLGPTYLDDNVKKENSSLYLAIMYVMGALGPAVGYLLGGLLIGFYVDPRNPVHLDQNDPRFIGNWWSG
FLLCAIAMFLVIFPMFTFPKKLPPRHKKKKKKKFSVDAVSDDDVLKEKSNNSEQADKKVSSMGFGKDVRD
LPRAAVRILSNMTFLFVSLSYTAESAIVTAFITFIPKFIESQFGIPASNASIYTGVIIVPSAGVGIVLGG
YIIKKLKLGARESAKLAMICSGVSLLCFSTLFIVGCESINLGGINIPYTTGPSLTMPHRNLTGSCNVNCG
CKIHEYEPVCGSDGITYFNPCLAGCVNSGNLSTGIRNYTECTCVQSRQVITPPTVGQRSQLRVVIVKTYL
NENGYAVSGKCKRTCNTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIP
TPIYFGAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKYKEDGLQRR
RQREFPLSTVSERVGHPDNARTRSCPAFSTQGEFHEETGLQKGIQCAAQTYPGPFPEAISSSADPGLEES
PAALEPPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH