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Report for CCDS62421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62421.1 Public Homo sapiens 18 TPGS2 24 110 108 CCDS HistoryNCBI Gene:25941Re-query CCDS DB by CCDS ID:62421.1Re-query CCDS DB by GeneID:25941See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62421.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383056.7 ENSP00000372530.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000383056.7Link to Ensembl Protein Viewer:ENSP00000372530.2Re-query CCDS DB by Nucleotide ID:ENST00000383056Re-query CCDS DB by Protein ID:ENSP00000372530
Original member Current member NCBI NM_001271950.2 NP_001258879.1 Accepted alive Link to Nucleotide Sequence:NM_001271950.2Link to Protein Sequence:NP_001258879.1Re-query CCDS DB by Nucleotide ID:NM_001271950Re-query CCDS DB by Protein ID:NP_001258879Link to BLAST:NP_001258879.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258879.1 257 Q68CL5-1 257 100% 0 0

Chromosomal Locations for CCDS 62421.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36796805 36797050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36798449 36798609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36800198 36800311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36807847 36807934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36818894 36818973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36828683 36828767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGAGGAGGAGGCATCGTCCCCGGGGCTGGGCTGCAGCAAGCCGCACCTGGAGAAGCTGACCCTGGGCA
TCACGCGCATCCTAGAATCTTCCCCAGGTGTGACTGAGGTGACCATCATAGAAAAGCCTCCTGCTGAACG
TCATATGATTTCTTCCTGGGAACAAAAGAATAACTGTGTGATGCCTGAAGATGTGAAGAACTTTTACCTG
ATGACCAATGGCTTCCACATGACATGGAGTGTGAAGCTGGATGCCAGTGATGATCAGCCAGAGAAGCCTC
ACTTTGACTCTCGCAGTGTGATATTTGAGCTGGATTCATGCAATGGCAGTGGGAAAGTTTGCCTTGTCTA
CAAAAGTGGGAAACCAGCATTAGCAGAAGACACTGAGATCTGGTTCCTGGACAGAGCGTTATACTGGCAT
TTTCTCACAGACACCTTTACTGCCTATTACCGCCTGCTCATCACCCACCTGGGCCTGCCCCAGTGGCAAT
ATGCCTTCACCAGCTATGGCATTAGCCCACAGGCCAAGCAATGGTTCAGCATGTATAAACCTATCACCTA
CAACACAAACCTGCTCACAGAAGAGACCGACTCCTTTGTGAATAAGCTAGATCCCAGCAAAGTGTTTAAG
AGCAAGAACAAGATCGTAATCCCAAAAAAGAAAGGGCCTGTGCAGCCTGCAGGTGGCCAGAAAGGGCCCT
CAGGACCCTCCGGTCCCTCCACTTCCTCCACTTCTAAATCCTCCTCTGGCTCTGGAAACCCCACCCGGAA
GTGA

Translation (257 aa):
MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCVMPEDVKNFYL
MTNGFHMTWSVKLDASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRALYWH
FLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETDSFVNKLDPSKVFK
SKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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