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Report for CCDS627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
627.1 Public Homo sapiens 1 UBE2U 24 110 108 CCDS HistoryNCBI Gene:148581Re-query CCDS DB by CCDS ID:627.1Re-query CCDS DB by GeneID:148581See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 627.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371076.7 ENSP00000360116.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371076.7Link to Ensembl Protein Viewer:ENSP00000360116.3Re-query CCDS DB by Nucleotide ID:ENST00000371076Re-query CCDS DB by Protein ID:ENSP00000360116
Original member Current member NCBI NM_152489.3 NP_689702.1 Accepted alive Link to Nucleotide Sequence:NM_152489.3Link to Protein Sequence:NP_689702.1Re-query CCDS DB by Nucleotide ID:NM_152489Re-query CCDS DB by Protein ID:NP_689702Link to BLAST:NP_689702.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689702.1 226 Q5VVX9-2 226 100% 0 0

Chromosomal Locations for CCDS 627.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 64204051 64204116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64205639 64205720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64206764 64206856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64210742 64210839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64214815 64214932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64220859 64220907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64232561 64232649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64241652 64241733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64244130 64244133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGCACGGCAGAGCTTACCTCTTGCTGCACAGAGACTTCTGTGATCTCAAGGAGAACAATTATAAGGGTA
TCACTGCTAAGCCTGTAAGTGAAGATATGATGGAATGGGAAGTTGAAATTGAAGGTCTACAGAATTCAGT
TTGGCAGGGTTTAGTCTTCCAACTGACAATACATTTTACATCGGAGTACAACTATGCTCCTCCAGTTGTG
AAATTTATAACAATTCCGTTTCATCCAAATGTAGACCCACACACTGGTCAGCCCTGTATAGACTTTTTGG
ACAACCCTGAGAAGTGGAATACAAACTATACATTGAGCAGCATCTTACTTGCCCTACAGGTTATGCTTTC
TAATCCAGTGCTAGAGAATCCAGTGAATTTGGAAGCAGCCAGAATACTGGTTAAAGATGAATCTCTGTAC
AGAACAATTCTAAGACTTTTCAACAGGCCATTACAAATGAAAGATGACAGCCAGGAGTTACCTAAAGACC
CACGTAAATGTATCAGACCAATTAAAACAACCTCATTTAGTGATTACTACCAGACATGGTCCAGAATAGC
TACATCAAAAGCCACAGAATACTACAGAACTCCATTGCTCAAAGTTCCAAATTTCATTGGACAGTATTAC
AAATGGAAGAAAATGGATCTACAGCATCAGAAAGAATGGAATTTAAAATGA

Translation (226 aa):
MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV
KFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLY
RTILRLFNRPLQMKDDSQELPKDPRKCIRPIKTTSFSDYYQTWSRIATSKATEYYRTPLLKVPNFIGQYY
KWKKMDLQHQKEWNLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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