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Report for CCDS63330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63330.1 Public Homo sapiens 20 STMN3 24 110 108 CCDS HistoryNCBI Gene:50861Re-query CCDS DB by CCDS ID:63330.1Re-query CCDS DB by GeneID:50861See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 63330.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540534.5 ENSP00000439840.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540534.5Link to Ensembl Protein Viewer:ENSP00000439840.1Re-query CCDS DB by Nucleotide ID:ENST00000540534Re-query CCDS DB by Protein ID:ENSP00000439840
Original member Current member NCBI NM_001276310.2 NP_001263239.1 Accepted alive Link to Nucleotide Sequence:NM_001276310.2Link to Protein Sequence:NP_001263239.1Re-query CCDS DB by Nucleotide ID:NM_001276310Re-query CCDS DB by Protein ID:NP_001263239Link to BLAST:NP_001263239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263239.1 169 Q9NZ72-2 169 100% 0 0

Chromosomal Locations for CCDS 63330.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 63641338 63641397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63642108 63642299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63643756 63643931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63644214 63644295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGAAGGAGCTGTCGGTGCTGTCGCTCATCTGCTCCTGCTTCTACACACAGCCGCACCCCAATACCGTCT
ACCAGTACGGGGACATGGAGGTGAAGCAGCTGGACAAGCGGGCCTCAGGCCAGAGCTTCGAGGTCATCCT
CAAGTCCCCTTCTGACCTGTCCCCAGAGAGCCCTATGCTCTCCTCCCCACCCAAGAAGAAGGACACCTCC
CTGGAGGAGCTGCAAAAGCGGCTGGAGGCAGCCGAGGAGCGGAGGAAGACGCAGGAGGCGCAGGTGCTGA
AGCAGCTGGCGGAGCGGCGCGAGCACGAGCGCGAGGTGCTGCACAAGGCGCTGGAGGAGAATAACAACTT
CAGCCGCCAGGCGGAGGAGAAGCTCAACTACAAGATGGAGCTCAGCAAGGAGATCCGCGAGGCACACCTG
GCCGCACTGCGCGAGCGGCTGCGCGAGAAGGAGCTGCACGCGGCCGAGGTGCGCAGGAACAAGGAGCAGC
GAGAAGAGATGTCGGGCTAA

Translation (169 aa):
MKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKSPSDLSPESPMLSSPPKKKDTS
LEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIREAHL
AALRERLREKELHAAEVRRNKEQREEMSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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