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Report for CCDS6367.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6367.2 Public Homo sapiens 8 PHF20L1 24 110 108 CCDS HistoryNCBI Gene:51105Re-query CCDS DB by CCDS ID:6367.2Re-query CCDS DB by GeneID:51105See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6367.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395386.7 ENSP00000378784.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395386.7Link to Ensembl Protein Viewer:ENSP00000378784.2Re-query CCDS DB by Nucleotide ID:ENST00000395386Re-query CCDS DB by Protein ID:ENSP00000378784
Original member Current member EBI ENST00000622263.4 ENSP00000482945.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622263.4Link to Ensembl Protein Viewer:ENSP00000482945.1Re-query CCDS DB by Nucleotide ID:ENST00000622263Re-query CCDS DB by Protein ID:ENSP00000482945
Original member Current member NCBI NM_016018.5 NP_057102.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016018.5Link to Protein Sequence:NP_057102.4Re-query CCDS DB by Nucleotide ID:NM_016018Re-query CCDS DB by Protein ID:NP_057102Link to BLAST:NP_057102.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057102.4 1017 A8MW92-1 1017 100% 0 0

Chromosomal Locations for CCDS 6367.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 132777829 132777911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132794410 132794581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132794733 132794817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132798772 132798860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132799095 132799172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132803819 132804032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132804615 132804740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132811046 132811128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132814637 132814889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132816888 132817076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132817339 132817545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132824004 132824060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132825264 132825371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132832235 132832399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132836540 132836721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132837712 132837811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132839387 132839582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132842515 132842875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132844156 132844318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132845781 132845923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3054 nt):
ATGAGTAAAAAGCCCCCAAATCGCCCTGGAATCACTTTTGAGATTGGTGCTCGTTTGGAGGCACTGGACT
ACTTACAAAAATGGTATCCATCACGAATTGAAAAAATTGACTATGAGGAGGGCAAGATGTTGGTCCATTT
TGAGCGCTGGAGTCATCGTTATGATGAGTGGATTTACTGGGATAGCAATAGATTGCGACCCCTTGAGAGA
CCAGCACTAAGAAAAGAAGGGCTAAAAGATGAGGAAGATTTCTTTGATTTTAAAGCTGGAGAAGAAGTTC
TGGCTCGTTGGACAGACTGTCGCTATTACCCTGCCAAGATTGAAGCAATTAACAAAGAAGGAACATTTAC
AGTTCAGTTTTATGATGGAGTAATTCGTTGTTTAAAAAGAATGCACATTAAAGCCATGCCCGAGGATGCT
AAGGGGCAGGTGAAATCCCAGCATCCACTAAGCTGGTGTTGTCCTATCGACCCAGCTGGATCGTGTAACC
AGTCTATGGGAAGTGAGGATTGGATAGCTTTAGTCAAAGCAGCTGCTGCAGCTGCAGCCAAGAACAAAAC
AGGGAGTAAACCTCGAACCAGCGCTAACAGCAATAAAGATAAGGATAAAGATGAGAGAAAGTGGTTTAAA
GTACCTTCAAAGAAGGAGGAAACTTCAACTTGTATAGCCACACCAGACGTAGAGAAGAAGGAAGATCTGC
CTACATCTAGTGAAACATTTGGACTTCATGTAGAGAACGTTCCAAAGATGGTCTTTCCACAGCCAGAGAG
CACATTATCAAACAAGAGGAAAAATAATCAAGGCAACTCGTTTCAGGCAAAGAGAGCTCGACTTAACAAG
ATTACTGGTTTGTTGGCATCCAAAGCTGTTGGGGTTGATGGTGCTGAAAAAAAGGAAGACTACAATGAAA
CAGCTCCAATGCTGGAGCAGGCGATTTCACCTAAACCTCAAAGTCAGAAAAAAAATGAAGCTGACATTAG
CAGTTCTGCCAACACTCAGAAACCTGCACTGTTATCCTCAACTTTGTCTTCAGGGAAGGCTCGCAGCAAG
AAATGCAAACATGAATCTGGAGATTCTTCTGGGTGTATAAAACCCCCTAAATCACCACTTTCCCCAGAAT
TAATACAAGTCGAGGATTTGACGCTTGTATCTCAGCTTTCTTCTTCAGTGATAAATAAAACTAGTCCTCC
ACAGCCTGTGAATCCCCCTAGACCTTTCAAGCATAGTGAGCGGAGAAGAAGATCTCAGCGTTTAGCCACC
TTACCCATGCCTGATGATTCTGTAGAAAAGGTTTCTTCTCCCTCTCCAGCCACTGATGGGAAAGTATTCT
CCATCAGTTCTCAAAATCAGCAAGAATCTTCAGTACCAGAGGTGCCTGATGTTGCACATTTGCCACTTGA
GAAGCTGGGACCCTGTCTCCCTCTTGACTTAAGTCGTGGTTCAGAAGTTACAGCACCGGTAGCCTCAGAT
TCCTCTTACCGTAATGAATGTCCCAGGGCAGAAAAAGAGGATACACAGATGCTTCCAAATCCTTCTTCCA
AAGCAATAGCTGATGGAAGAGGAGCTCCAGCAGCAGCAGGAATATCGAAAACAGAAAAAAAAGTGAAATT
GGAAGACAAAAGCTCAACAGCATTTGGTAAGAGAAAAGAAAAAGATAAGGAAAGAAGAGAGAAGAGAGAC
AAAGATCACTACAGACCAAAACAGAAGAAGAAGAAAAAAAAGAAAAAGAAATCTAAGCAACATGACTATT
CAGACTATGAAGACAGTTCCCTCGAATTTTTGGAAAGGTGCTCTTCTCCACTAACTCGATCTTCTGGGAG
TTCTCTGGCTTCACGAAGCATGTTTACGGAGAAAACTACAACCTATCAGTACCCAAGGGCAATTCTATCC
GTTGATCTTAGTGGTGAAAACTTATCAGATGTAGACTTCCTAGATGATTCTTCAACGGAGAGTTTGCTTC
TGAGTGGGGATGAATACAATCAGGACTTTGATTCAACCAATTTTGAGGAATCTCAGGATGAGGATGATGC
TCTTAATGAAATTGTGCGATGTATTTGTGAGATGGATGAGGAGAATGGCTTCATGATCCAGTGTGAAGAG
TGCTTGTGTTGGCAACACAGCGTGTGCATGGGGCTGCTGGAGGAGAGCATTCCAGAGCAGTACATCTGCT
ATATCTGCCGGGACCCACCAGGTCAGAGGTGGAGTGCAAAATATCGTTATGATAAGGAGTGGTTGAATAA
TGGGAGAATGTGCGGGTTATCATTTTTCAAAGAAAATTATTCTCATCTCAATGCCAAAAAGATAGTTTCT
ACACATCACCTGCTTGCTGATGTCTATGGTGTTACAGAAGTGCTACACGGGCTACAGCTGAAGATTGGAA
TACTAAAGAATAAACATCATCCTGACCTTCATCTCTGGGCTTGTTCCGGGAAGCGAAAAGACCAAGATCA
AATAATAGCTGGGGTGGAGAAAAAAATAGCTCAAGACACAGTTAATCGAGAAGAAAAGAAATATGTACAG
AACCATAAAGAACCACCTCGTTTGCCCCTAAAAATGGAAGGAACTTATATAACAAGTGAGCATAGCTATC
AAAAGCCACAAAGTTTTGGTCAGGACTGTAAATCTCTCGCAGACCCTGGGAGCTCAGATGATGATGATGT
TAGTAGTTTGGAAGAAGAACAAGAATTCCACATGAGAAGTAAAAACAGTTTACAGTACTCAGCAAAAGAA
CATGGAATGCCTGAAAAGAATCCAGCTGAAGGGAATACAGTATTTGTTTATAATGATAAAAAGGGCACCG
AAGACCCAGGAGACTCACATCTTCAGTGGCAGCTCAATCTCCTTACACACATAGAAAATGTGCAGAACGA
AGTTACCAGCAGGATGGACCTAATAGAAAAAGAAGTCGATGTTCTGGAAAGCTGGCTTGATTTCACAGGG
GAGTTGGAGCCACCAGATCCTCTTGCAAGATTGCCCCAACTTAAACGCCACATAAAACAGCTCCTAATTG
ACATGGGCAAAGTACAGCAGATAGCAACTCTTTGCTCTGTATGA

Translation (1017 aa):
MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLER
PALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPEDA
KGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDERKWFK
VPSKKEETSTCIATPDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNK
ITGLLASKAVGVDGAEKKEDYNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSK
KCKHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQLSSSVINKTSPPQPVNPPRPFKHSERRRRSQRLAT
LPMPDDSVEKVSSPSPATDGKVFSISSQNQQESSVPEVPDVAHLPLEKLGPCLPLDLSRGSEVTAPVASD
SSYRNECPRAEKEDTQMLPNPSSKAIADGRGAPAAAGISKTEKKVKLEDKSSTAFGKRKEKDKERREKRD
KDHYRPKQKKKKKKKKKSKQHDYSDYEDSSLEFLERCSSPLTRSSGSSLASRSMFTEKTTTYQYPRAILS
VDLSGENLSDVDFLDDSSTESLLLSGDEYNQDFDSTNFEESQDEDDALNEIVRCICEMDEENGFMIQCEE
CLCWQHSVCMGLLEESIPEQYICYICRDPPGQRWSAKYRYDKEWLNNGRMCGLSFFKENYSHLNAKKIVS
THHLLADVYGVTEVLHGLQLKIGILKNKHHPDLHLWACSGKRKDQDQIIAGVEKKIAQDTVNREEKKYVQ
NHKEPPRLPLKMEGTYITSEHSYQKPQSFGQDCKSLADPGSSDDDDVSSLEEEQEFHMRSKNSLQYSAKE
HGMPEKNPAEGNTVFVYNDKKGTEDPGDSHLQWQLNLLTHIENVQNEVTSRMDLIEKEVDVLESWLDFTG
ELEPPDPLARLPQLKRHIKQLLIDMGKVQQIATLCSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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