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Report for CCDS6383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6383.1 Public Homo sapiens 8 PTP4A3 24 110 108 CCDS HistoryNCBI Gene:11156Re-query CCDS DB by CCDS ID:6383.1Re-query CCDS DB by GeneID:11156See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6383.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349124.3 ENSP00000331730.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000349124.3Link to Ensembl Protein Viewer:ENSP00000331730.2Re-query CCDS DB by Nucleotide ID:ENST00000349124Re-query CCDS DB by Protein ID:ENSP00000331730
Original member Current member EBI ENST00000329397.6 ENSP00000332274.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329397.6Link to Ensembl Protein Viewer:ENSP00000332274.1Re-query CCDS DB by Nucleotide ID:ENST00000329397Re-query CCDS DB by Protein ID:ENSP00000332274
Original member Current member EBI ENST00000521578.6 ENSP00000428976.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000521578.6Link to Ensembl Protein Viewer:ENSP00000428976.1Re-query CCDS DB by Nucleotide ID:ENST00000521578Re-query CCDS DB by Protein ID:ENSP00000428976
Original member Current member EBI ENST00000680615.1 ENSP00000505068.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680615.1Link to Ensembl Protein Viewer:ENSP00000505068.1Re-query CCDS DB by Nucleotide ID:ENST00000680615Re-query CCDS DB by Protein ID:ENSP00000505068
Original member Current member NCBI NM_032611.3 NP_116000.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032611.3Link to Protein Sequence:NP_116000.1Re-query CCDS DB by Nucleotide ID:NM_032611Re-query CCDS DB by Protein ID:NP_116000Link to BLAST:NP_116000.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116000.1 173 O75365-1 173 100% 0 0

Chromosomal Locations for CCDS 6383.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 141422241 141422345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 141425048 141425140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 141426939 141427069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 141427750 141427824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 141430927 141431044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGCTCGGATGAACCGCCCGGCCCCGGTGGAGGTGAGCTACAAACACATGCGCTTCCTCATCACCCACA
ACCCCACCAACGCCACGCTCAGCACCTTCATTGAGGACCTGAAGAAGTACGGGGCTACCACTGTGGTGCG
TGTGTGTGAAGTGACCTATGACAAAACGCCGCTGGAGAAGGATGGCATCACCGTTGTGGACTGGCCGTTT
GACGATGGGGCGCCCCCGCCCGGCAAGGTAGTGGAAGACTGGCTGAGCCTGGTGAAGGCCAAGTTCTGTG
AGGCCCCCGGCAGCTGCGTGGCTGTGCACTGCGTGGCGGGCCTGGGCCGGGCTCCAGTCCTTGTGGCGCT
GGCCCTTATTGAGAGCGGGATGAAGTACGAGGACGCCATCCAGTTCATCCGCCAGAAGCGCCGCGGAGCC
ATCAACAGCAAGCAGCTCACCTACCTGGAGAAATACCGGCCCAAACAGAGGCTGCGGTTCAAAGACCCAC
ACACGCACAAGACCCGGTGCTGCGTTATGTAG

Translation (173 aa):
MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEKDGITVVDWPF
DDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALIESGMKYEDAIQFIRQKRRGA
INSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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