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Report for CCDS6389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6389.1 Public Homo sapiens 8 LYNX1 24 110 108 CCDS HistoryNCBI Gene:66004Re-query CCDS DB by CCDS ID:6389.1Re-query CCDS DB by GeneID:66004See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6389.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614491.1 ENSP00000477648.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614491.1Link to Ensembl Protein Viewer:ENSP00000477648.1Re-query CCDS DB by Nucleotide ID:ENST00000614491Re-query CCDS DB by Protein ID:ENSP00000477648
Original member Current member EBI ENST00000621401.4 ENSP00000478390.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621401.4Link to Ensembl Protein Viewer:ENSP00000478390.1Re-query CCDS DB by Nucleotide ID:ENST00000621401Re-query CCDS DB by Protein ID:ENSP00000478390
Original member Current member EBI ENST00000620006.4 ENSP00000478402.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620006.4Link to Ensembl Protein Viewer:ENSP00000478402.1Re-query CCDS DB by Nucleotide ID:ENST00000620006Re-query CCDS DB by Protein ID:ENSP00000478402
Original member Current member EBI ENST00000652477.1 ENSP00000498325.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000652477.1Link to Ensembl Protein Viewer:ENSP00000498325.1Re-query CCDS DB by Nucleotide ID:ENST00000652477Re-query CCDS DB by Protein ID:ENSP00000498325
Original member Current member NCBI NM_001356370.1 NP_001343299.1 Accepted alive Link to Nucleotide Sequence:NM_001356370.1Link to Protein Sequence:NP_001343299.1Re-query CCDS DB by Nucleotide ID:NM_001356370Re-query CCDS DB by Protein ID:NP_001343299Link to BLAST:NP_001343299.1
Original member Current member NCBI NM_177457.5 NP_803252.1 Accepted alive Link to Nucleotide Sequence:NM_177457.5Link to Protein Sequence:NP_803252.1Re-query CCDS DB by Nucleotide ID:NM_177457Re-query CCDS DB by Protein ID:NP_803252Link to BLAST:NP_803252.1
Original member Current member NCBI NM_177476.4 NP_803429.1 Accepted alive Link to Nucleotide Sequence:NM_177476.4Link to Protein Sequence:NP_803429.1Re-query CCDS DB by Nucleotide ID:NM_177476Re-query CCDS DB by Protein ID:NP_803429Link to BLAST:NP_803429.1
Original member Current member NCBI NM_177477.4 NP_803430.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_177477.4Link to Protein Sequence:NP_803430.1Re-query CCDS DB by Nucleotide ID:NM_177477Re-query CCDS DB by Protein ID:NP_803430Link to BLAST:NP_803430.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343299.1 116 P0DP58 116 100% 0 0
NP_803252.1 116 P0DP58 116 100% 0 0
NP_803429.1 116 P0DP58 116 100% 0 0
NP_803430.1 116 P0DP58 116 100% 0 0

Chromosomal Locations for CCDS 6389.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 142775167 142775363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 142775593 142775694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 142775906 142775957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGACGCCCCTGCTCACCCTGATCCTGGTGGTCCTCATGGGCTTACCTCTGGCCCAGGCCTTGGACTGCC
ACGTGTGTGCCTACAACGGAGACAACTGCTTCAACCCCATGCGCTGCCCGGCTATGGTTGCCTACTGCAT
GACCACGCGCACCTACTACACCCCCACCAGGATGAAGGTCAGTAAGTCCTGCGTGCCCCGCTGCTTCGAG
ACTGTGTATGATGGCTACTCCAAGCACGCGTCCACCACCTCCTGCTGCCAGTACGACCTCTGCAACGGCA
CCGGCCTTGCCACCCCGGCCACCCTGGCCCTGGCCCCCATCCTCCTGGCCACCCTCTGGGGTCTCCTCTA
A

Translation (116 aa):
MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKSCVPRCFE
TVYDGYSKHASTTSCCQYDLCNGTGLATPATLALAPILLATLWGLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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