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Report for CCDS6423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6423.1 Public Homo sapiens 8 SLC52A2 24 110 108 CCDS HistoryNCBI Gene:79581Re-query CCDS DB by CCDS ID:6423.1Re-query CCDS DB by GeneID:79581See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6423.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329994.7 ENSP00000333638.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329994.7Link to Ensembl Protein Viewer:ENSP00000333638.2Re-query CCDS DB by Nucleotide ID:ENST00000329994Re-query CCDS DB by Protein ID:ENSP00000333638
Original member Current member EBI ENST00000402965.5 ENSP00000385961.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402965.5Link to Ensembl Protein Viewer:ENSP00000385961.1Re-query CCDS DB by Nucleotide ID:ENST00000402965Re-query CCDS DB by Protein ID:ENSP00000385961
Original member Current member EBI ENST00000534725.6 ENSP00000431965.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534725.6Link to Ensembl Protein Viewer:ENSP00000431965.2Re-query CCDS DB by Nucleotide ID:ENST00000534725Re-query CCDS DB by Protein ID:ENSP00000431965
Original member Current member EBI ENST00000527078.6 ENSP00000434728.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527078.6Link to Ensembl Protein Viewer:ENSP00000434728.1Re-query CCDS DB by Nucleotide ID:ENST00000527078Re-query CCDS DB by Protein ID:ENSP00000434728
Original member Current member EBI ENST00000530047.5 ENSP00000435820.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530047.5Link to Ensembl Protein Viewer:ENSP00000435820.1Re-query CCDS DB by Nucleotide ID:ENST00000530047Re-query CCDS DB by Protein ID:ENSP00000435820
Original member Current member EBI ENST00000643944.2 ENSP00000496184.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000643944.2Link to Ensembl Protein Viewer:ENSP00000496184.2Re-query CCDS DB by Nucleotide ID:ENST00000643944Re-query CCDS DB by Protein ID:ENSP00000496184
Original member Current member EBI ENST00000532815.2 ENSP00000501933.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532815.2Link to Ensembl Protein Viewer:ENSP00000501933.1Re-query CCDS DB by Nucleotide ID:ENST00000532815Re-query CCDS DB by Protein ID:ENSP00000501933
Original member Current member EBI ENST00000675121.1 ENSP00000501993.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675121.1Link to Ensembl Protein Viewer:ENSP00000501993.1Re-query CCDS DB by Nucleotide ID:ENST00000675121Re-query CCDS DB by Protein ID:ENSP00000501993
Original member Current member EBI ENST00000533662.2 ENSP00000502274.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533662.2Link to Ensembl Protein Viewer:ENSP00000502274.1Re-query CCDS DB by Nucleotide ID:ENST00000533662Re-query CCDS DB by Protein ID:ENSP00000502274
Original member Current member EBI ENST00000675888.1 ENSP00000502294.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675888.1Link to Ensembl Protein Viewer:ENSP00000502294.1Re-query CCDS DB by Nucleotide ID:ENST00000675888Re-query CCDS DB by Protein ID:ENSP00000502294
Original member Current member EBI ENST00000674870.1 ENSP00000502406.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674870.1Link to Ensembl Protein Viewer:ENSP00000502406.1Re-query CCDS DB by Nucleotide ID:ENST00000674870Re-query CCDS DB by Protein ID:ENSP00000502406
Original member Current member EBI ENST00000675292.1 ENSP00000502652.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675292.1Link to Ensembl Protein Viewer:ENSP00000502652.1Re-query CCDS DB by Nucleotide ID:ENST00000675292Re-query CCDS DB by Protein ID:ENSP00000502652
Original member Current member EBI ENST00000675280.1 ENSP00000502796.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675280.1Link to Ensembl Protein Viewer:ENSP00000502796.1Re-query CCDS DB by Nucleotide ID:ENST00000675280Re-query CCDS DB by Protein ID:ENSP00000502796
Original member Current member NCBI NM_001253815.2 NP_001240744.1 Accepted alive Link to Nucleotide Sequence:NM_001253815.2Link to Protein Sequence:NP_001240744.1Re-query CCDS DB by Nucleotide ID:NM_001253815Re-query CCDS DB by Protein ID:NP_001240744Link to BLAST:NP_001240744.1
Original member Current member NCBI NM_001253816.2 NP_001240745.1 Accepted alive Link to Nucleotide Sequence:NM_001253816.2Link to Protein Sequence:NP_001240745.1Re-query CCDS DB by Nucleotide ID:NM_001253816Re-query CCDS DB by Protein ID:NP_001240745Link to BLAST:NP_001240745.1
Original member Current member NCBI NM_001363118.2 NP_001350047.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001363118.2Link to Protein Sequence:NP_001350047.1Re-query CCDS DB by Nucleotide ID:NM_001363118Re-query CCDS DB by Protein ID:NP_001350047Link to BLAST:NP_001350047.1
Original member Current member NCBI NM_001363120.2 NP_001350049.1 Accepted alive Link to Nucleotide Sequence:NM_001363120.2Link to Protein Sequence:NP_001350049.1Re-query CCDS DB by Nucleotide ID:NM_001363120Re-query CCDS DB by Protein ID:NP_001350049Link to BLAST:NP_001350049.1
Original member Current member NCBI NM_001363121.2 NP_001350050.1 Accepted alive Link to Nucleotide Sequence:NM_001363121.2Link to Protein Sequence:NP_001350050.1Re-query CCDS DB by Nucleotide ID:NM_001363121Re-query CCDS DB by Protein ID:NP_001350050Link to BLAST:NP_001350050.1
Original member Current member NCBI NM_024531.5 NP_078807.1 Accepted alive Link to Nucleotide Sequence:NM_024531.5Link to Protein Sequence:NP_078807.1Re-query CCDS DB by Nucleotide ID:NM_024531Re-query CCDS DB by Protein ID:NP_078807Link to BLAST:NP_078807.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240744.1 445 Q9HAB3 445 100% 0 0
NP_001240745.1 445 Q9HAB3 445 100% 0 0
NP_001350047.1 445 Q9HAB3 445 100% 0 0
NP_001350049.1 445 Q9HAB3 445 100% 0 0
NP_001350050.1 445 Q9HAB3 445 100% 0 0
NP_078807.1 445 Q9HAB3 445 100% 0 0

Chromosomal Locations for CCDS 6423.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144359294 144359423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144359623 144360493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144360590 144360713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144360803 144361015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGCAGCACCCACGCCCGCCCGTCCGGTGCTGACCCACCTGCTGGTGGCTCTCTTCGGCATGGGCTCCT
GGGCTGCGGTCAATGGGATCTGGGTGGAGCTACCTGTGGTGGTCAAAGAGCTTCCAGAGGGTTGGAGCCT
CCCCTCTTACGTCTCTGTGCTTGTGGCTCTGGGGAACCTGGGTCTGCTGGTGGTGACCCTCTGGAGGAGG
CTGGCCCCAGGAAAGGACGAGCAGGTCCCCATCCGGGTGGTGCAGGTGCTGGGCATGGTGGGCACAGCCC
TGCTGGCCTCTCTGTGGCACCATGTGGCCCCAGTGGCAGGACAGTTGCATTCTGTGGCCTTCTTAGCACT
GGCCTTTGTGCTGGCACTGGCATGCTGTGCCTCGAATGTCACTTTCCTGCCCTTCTTGAGCCACCTGCCA
CCTCGCTTCTTACGGTCATTCTTCCTGGGTCAAGGCCTGAGTGCCCTGCTGCCCTGCGTGCTGGCCCTAG
TGCAGGGTGTGGGCCGCCTCGAGTGCCCGCCAGCCCCCATCAACGGCACCCCTGGCCCCCCGCTCGACTT
CCTTGAGCGTTTTCCCGCCAGCACCTTCTTCTGGGCACTGACTGCCCTTCTGGTCGCTTCAGCTGCTGCC
TTCCAGGGTCTTCTGCTGCTGTTGCCGCCACCACCATCTGTACCCACAGGGGAGTTAGGATCAGGCCTCC
AGGTGGGAGCCCCAGGAGCAGAGGAAGAGGTGGAAGAGTCCTCACCACTGCAAGAGCCACCAAGCCAGGC
AGCAGGCACCACCCCTGGTCCAGACCCTAAGGCCTATCAGCTTCTATCAGCCCGCAGTGCCTGCCTGCTG
GGCCTGTTGGCCGCCACCAACGCGCTGACCAATGGCGTGCTGCCTGCCGTGCAGAGCTTTTCCTGCTTAC
CCTACGGGCGTCTGGCCTACCACCTGGCTGTGGTGCTGGGCAGTGCTGCCAATCCCCTGGCCTGCTTCCT
GGCCATGGGTGTGCTGTGCAGGTCCTTGGCAGGGCTGGGCGGCCTCTCTCTGCTGGGCGTGTTCTGTGGG
GGCTACCTGATGGCGCTGGCAGTCCTGAGCCCCTGCCCGCCCCTGGTGGGCACCTCGGCGGGGGTGGTCC
TCGTGGTGCTGTCGTGGGTGCTGTGTCTTGGCGTGTTCTCCTACGTGAAGGTGGCAGCCAGCTCCCTGCT
GCATGGCGGGGGCCGGCCGGCATTGCTGGCAGCCGGCGTGGCCATCCAGGTGGGCTCTCTGCTCGGCGCT
GTTGCTATGTTCCCCCCGACCAGCATCTATCACGTGTTCCACAGCAGAAAGGACTGTGCAGACCCCTGTG
ACTCCTGA

Translation (445 aa):
MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNLGLLVVTLWRR
LAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFVLALACCASNVTFLPFLSHLP
PRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGTPGPPLDFLERFPASTFFWALTALLVASAAA
FQGLLLLLPPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLL
GLLAATNALTNGVLPAVQSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCG
GYLMALAVLSPCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGA
VAMFPPTSIYHVFHSRKDCADPCDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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