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Report for CCDS64421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64421.1 Public Homo sapiens 6 TREML1 24 110 108 CCDS HistoryNCBI Gene:340205Re-query CCDS DB by CCDS ID:64421.1Re-query CCDS DB by GeneID:340205See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64421.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373127.8 ENSP00000362219.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373127.8Link to Ensembl Protein Viewer:ENSP00000362219.4Re-query CCDS DB by Nucleotide ID:ENST00000373127Re-query CCDS DB by Protein ID:ENSP00000362219
Original member Current member NCBI NM_001271807.1 NP_001258736.1 Accepted alive Link to Nucleotide Sequence:NM_001271807.1Link to Protein Sequence:NP_001258736.1Re-query CCDS DB by Nucleotide ID:NM_001271807Re-query CCDS DB by Protein ID:NP_001258736Link to BLAST:NP_001258736.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258736.1 199 Q86YW5-2 199 100% 0 0

Chromosomal Locations for CCDS 64421.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41149887 41149918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41150819 41150907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41151282 41151384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41153758 41154090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41154246 41154288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGGCCTCACCCTGCTCTTGCTGCTGCTCCTGGGACTAGAAGGTCAGGGCATAGTTGGCAGCCTCCCTG
AGGTGCTGCAGGCACCCGTGGGAAGCTCCATTCTGGTGCAGTGCCACTACAGGCTCCAGGATGTCAAAGC
TCAGAAGGTGTGGTGCCGGTTCTTGCCGGAGGGGTGCCAGCCCCTGGTGTCCTCAGCTGTGGATCGCAGA
GCTCCAGCGGGCAGGCGTACGTTTCTCACAGACCTGGGTGGGGGCCTGCTGCAGGTGGAAATGGTTACCC
TGCAGGAAGAGGATGCTGGCGAGTATGGCTGCATGGTGGATGGGGCCAGGGGGCCCCAGATTTTGCACAG
AGTCTCTCTGAACATACTGCCCCCAGAGGAAGAAGAAGAGACCCATAAGATTGGCAGTCTGGCTGAGAAC
GCATTCTCAGACCCTGCAGGCAGTGCCAACCCTTTGGAACCCAGCCAGGATGAGAAGAGCATCCCCTTGA
TCTGGGGTGCTGTGCTCCTGGTAGGTCTGCTGGTGGCAGCGGTGGTGCTGTTTGCTGTGATGGCCAAGAG
GAAACAAGAATCCCTCCTCAGTGGTCCACCACGTCAGTGA

Translation (199 aa):
MGLTLLLLLLLGLEGQGIVGSLPEVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRR
APAGRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNILPPEEEEETHKIGSLAEN
AFSDPAGSANPLEPSQDEKSIPLIWGAVLLVGLLVAAVVLFAVMAKRKQESLLSGPPRQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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