NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS64739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64739.1 Public Homo sapiens 7 COL26A1 24 110 108 CCDS HistoryNCBI Gene:136227Re-query CCDS DB by CCDS ID:64739.1Re-query CCDS DB by GeneID:136227See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64739.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313669.12 ENSP00000318234.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000313669.12Link to Ensembl Protein Viewer:ENSP00000318234.8Re-query CCDS DB by Nucleotide ID:ENST00000313669Re-query CCDS DB by Protein ID:ENSP00000318234
Original member Current member NCBI NM_001278563.3 NP_001265492.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001278563.3Link to Protein Sequence:NP_001265492.1Re-query CCDS DB by Nucleotide ID:NM_001278563Re-query CCDS DB by Protein ID:NP_001265492Link to BLAST:NP_001265492.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265492.1 441 Q96A83-1 441 100% 0 0

Chromosomal Locations for CCDS 64739.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101363033 101363190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101419977 101420099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101447684 101447787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101533082 101533143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101539893 101540049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101543998 101544096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101545338 101545490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101547156 101547239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101549171 101549223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101551108 101551143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101553326 101553376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101555787 101555871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101557370 101557530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGAAGCTGGCCCTGCTCCTGCCCTGGGCGTGTTGCTGCCTCTGCGGGTCGGCGCTGGCCACCGGCTTCC
TCTATCCCTTCTCGGCCGCAGCTCTGCAGCAGCACGGCTACCCCGAGCCCGGCGCCGGCTCCCCTGGCAG
CGGCTACGCGAGCCGCCGGCACTGGTGCCATCACACAGTGACACGGACGGTGTCCTGCCAGGTGCAGAAT
GGCTCGGAGACGGTGGTCCAGCGCGTGTACCAGAGCTGCCGGTGGCCGGGGCCCTGCGCCAACCTCGTAA
GTTACAGGACTCTGATCAGACCCACCTACAGAGTGTCCTACCGCACGGTGACGGTGCTGGAGTGGAGATG
CTGCCCTGGCTTCACCGGGAGCAACTGTGATGAGGAATGCATGAACTGCACCCGGCTCAGTGACATGAGT
GAGCGACTGACCACACTGGAGGCCAAGGTCCTCCTGCTAGAAGCAGCAGAACGGCCCTCCAGCCCGGACA
ACGACCTGCCAGCCCCCGAGAGCACTCCGCCGACCTGGAATGAGGACTTCCTCCCCGACGCCATCCCTCT
TGCTCACCCTGTGCCACGACAGAGAAGGCCCACGGGCCCAGCCGGGCCCCCGGGGCAGACAGGACCACCA
GGGCCTGCAGGCCCCCCCGGGTCTAAAGGTGACCGAGGCCAGACAGGAGAGAAGGGTCCAGCGGGGCCGC
CTGGGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGATGGGGCGCCCCGGCCCCCCAGGACC
ACCCGGCCCAGCAGGCAACCCAGGCCCCTCACCAAACAGCCCCCAGGGCGCCCTCTACTCCCTGCAGCCG
CCTACAGACAAAGACAATGGAGACTCAAGGCTGGCCTCTGCCATCGTGGACACAGTGCTGGCAGGTGTCC
CAGGACCCCGGGGTCCCCCTGGTCCACCAGGTCCCCCTGGGCCTCGAGGTCCCCCAGGACCCCCAGGAAC
ACCTGGATCCCAGGGCCTGGCTGGAGAGCGAGGCACAGTGGGGCCGTCCGGTGAACCTGGCGTGAAGGGG
GAAGAAGGAGAGAAAGCCGCCACTGCAGAGGGCGAGGGGGTGCAGCAGCTGAGAGAGGCCCTGAAGATCC
TGGCAGAGCGAGTCCTCATCCTGGAGCACATGATTGGGATCCACGATCCCCTGGCCTCCCCAGAGGGAGG
TTCTGGCCAGGATGCTGCCCTGAGAGCCAACCTCAAGATGAAGAGGGGTGGCGCCCAACCCGATGGGGTC
CTTGCTGCCCTGCTTGGGCCCGACCCTGGACAGAAGAGCGTGGACCAGGCCAGCAGCAGGAAGTGA

Translation (441 aa):
MKLALLLPWACCCLCGSALATGFLYPFSAAALQQHGYPEPGAGSPGSGYASRRHWCHHTVTRTVSCQVQN
GSETVVQRVYQSCRWPGPCANLVSYRTLIRPTYRVSYRTVTVLEWRCCPGFTGSNCDEECMNCTRLSDMS
ERLTTLEAKVLLLEAAERPSSPDNDLPAPESTPPTWNEDFLPDAIPLAHPVPRQRRPTGPAGPPGQTGPP
GPAGPPGSKGDRGQTGEKGPAGPPGLLGPPGPRGLPGEMGRPGPPGPPGPAGNPGPSPNSPQGALYSLQP
PTDKDNGDSRLASAIVDTVLAGVPGPRGPPGPPGPPGPRGPPGPPGTPGSQGLAGERGTVGPSGEPGVKG
EEGEKAATAEGEGVQQLREALKILAERVLILEHMIGIHDPLASPEGGSGQDAALRANLKMKRGGAQPDGV
LAALLGPDPGQKSVDQASSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH