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Report for CCDS66332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66332.1 Public Homo sapiens 12 RERGL 24 110 108 CCDS HistoryNCBI Gene:79785Re-query CCDS DB by CCDS ID:66332.1Re-query CCDS DB by GeneID:79785See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66332.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538724.6 ENSP00000437814.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000538724.6Link to Ensembl Protein Viewer:ENSP00000437814.1Re-query CCDS DB by Nucleotide ID:ENST00000538724Re-query CCDS DB by Protein ID:ENSP00000437814
Original member Current member NCBI NM_001286201.2 NP_001273130.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001286201.2Link to Protein Sequence:NP_001273130.1Re-query CCDS DB by Nucleotide ID:NM_001286201Re-query CCDS DB by Protein ID:NP_001273130Link to BLAST:NP_001273130.1

Chromosomal Locations for CCDS 66332.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 18081191 18081473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 18084517 18084665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 18085620 18085693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 18088900 18088956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 18090089 18090140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGAATGATGTGAAGCTTGCTGTCTTGGGTGGTGAAGGAACAGGCAAATCTGCCCTTACAGTGAGGTTTC
TTACTAAGCGATTCATTGGAGAATATGCTTCTAATTTTGAATCTATCTATAAGAAGCACTTGTGTTTGGA
AAGGAAACAACTAAATCTAGAAATATATGACCCTTGTTCTCAAACACAGAAAGCAAAATTCTCCCTCACA
AGTGAGCTTCACTGGGCAGATGGGTTTGTTATTGTGTATGACATCAGTGATAGGTCTTCATTTGCTTTTG
CAAAAGCGCTGATCTACAGAATCCGGGAGCCACAAACTAGTCATTGTAAAAGAGCTGTGGAATCAGCAGT
GTTTTTGGTTGGCAACAAACGAGATCTTTGTCATGTGCGAGAGGTTGGCTGGGAAGAAGGGCAAAAGCTG
GCACTGGAAAACCGATGCCAATTCTGTGAACTGTCTGCAGCAGAGCAGTCTCTGGAGGTGGAAATGATGT
TTATCAGAATTATCAAGGACATCCTGATAAACTTCAAACTCAAAGAAAAGAGACGTCCCAGTGGATCTAA
ATCAATGGCCAAATTGATCAATAATGTATTTGGAAAGAGAAGGAAATCTGTTTAG

Translation (204 aa):
MNDVKLAVLGGEGTGKSALTVRFLTKRFIGEYASNFESIYKKHLCLERKQLNLEIYDPCSQTQKAKFSLT
SELHWADGFVIVYDISDRSSFAFAKALIYRIREPQTSHCKRAVESAVFLVGNKRDLCHVREVGWEEGQKL
ALENRCQFCELSAAEQSLEVEMMFIRIIKDILINFKLKEKRRPSGSKSMAKLINNVFGKRRKSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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