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Report for CCDS6745.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6745.1 Public Homo sapiens 9 STX17 24 110 108 CCDS HistoryNCBI Gene:55014Re-query CCDS DB by CCDS ID:6745.1Re-query CCDS DB by GeneID:55014See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6745.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259400.11 ENSP00000259400.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259400.11Link to Ensembl Protein Viewer:ENSP00000259400.6Re-query CCDS DB by Nucleotide ID:ENST00000259400Re-query CCDS DB by Protein ID:ENSP00000259400
Original member Current member EBI ENST00000534052.1 ENSP00000433484.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534052.1Link to Ensembl Protein Viewer:ENSP00000433484.1Re-query CCDS DB by Nucleotide ID:ENST00000534052Re-query CCDS DB by Protein ID:ENSP00000433484
Original member Current member EBI ENST00000525640.5 ENSP00000435981.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525640.5Link to Ensembl Protein Viewer:ENSP00000435981.1Re-query CCDS DB by Nucleotide ID:ENST00000525640Re-query CCDS DB by Protein ID:ENSP00000435981
Original member Current member NCBI NM_017919.3 NP_060389.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017919.3Link to Protein Sequence:NP_060389.2Re-query CCDS DB by Nucleotide ID:NM_017919Re-query CCDS DB by Protein ID:NP_060389Link to BLAST:NP_060389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060389.2 302 P56962 302 100% 0 0

Chromosomal Locations for CCDS 6745.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 99915240 99915362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99928778 99928843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99951060 99951285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99959917 99960032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99960105 99960155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99967653 99967739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99968434 99968673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGTCTGAAGATGAAGAAAAAGTGAAATTACGCCGTCTTGAACCAGCTATCCAGAAATTCATTAAGATAG
TAATCCCAACAGACCTGGAAAGGTTAAGAAAGCACCAGATAAATATTGAGAAGTATCAAAGGTGCAGAAT
CTGGGACAAGTTGCATGAAGAGCATATCAATGCAGGACGTACAGTTCAGCAACTCCGATCCAATATCCGA
GAAATTGAGAAACTTTGTTTGAAAGTCCGAAAGGATGACCTAGTACTTCTGAAGAGAATGATAGATCCTG
TTAAAGAAGAAGCATCAGCAGCAACAGCAGAATTTCTCCAACTCCATTTGGAATCTGTAGAAGAACTTAA
GAAGCAATTTAATGATGAAGAAACTTTGCTACAGCCTCCTTTGACCAGATCCATGACTGTTGGTGGAGCA
TTTCATACTACTGAAGCTGAAGCTAGTTCTCAGAGTTTGACTCAGATATATGCCTTACCTGAAATTCCTC
AAGATCAAAATGCTGCAGAATCGTGGGAAACCTTAGAAGCGGACTTAATTGAACTTAGCCAACTGGTCAC
TGACTTCTCTCTCCTAGTGAATTCTCAGCAGGAGAAGATTGACAGCATTGCAGACCATGTCAACAGTGCT
GCTGTGAATGTTGAAGAGGGAACCAAAAACTTAGGGAAGGCTGCAAAATACAAGCTGGCAGCTCTGCCTG
TGGCAGGTGCACTCATCGGGGGAATGGTAGGGGGTCCTATTGGCCTCCTTGCAGGCTTCAAAGTGGCAGG
AATTGCAGCTGCACTTGGTGGTGGGGTGTTGGGCTTCACAGGTGGAAAATTGATACAAAGAAAGAAACAG
AAAATGATGGAGAAGCTCACTTCCAGCTGTCCAGATCTTCCCAGCCAAACTGACAAGAAATGCAGTTAA

Translation (302 aa):
MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQQLRSNIR
EIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQFNDEETLLQPPLTRSMTVGGA
FHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADLIELSQLVTDFSLLVNSQQEKIDSIADHVNSA
AVNVEEGTKNLGKAAKYKLAALPVAGALIGGMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQ
KMMEKLTSSCPDLPSQTDKKCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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