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Report for CCDS69663.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69663.1 Public Homo sapiens 9 GARNL3 24 110 108 CCDS HistoryNCBI Gene:84253Re-query CCDS DB by CCDS ID:69663.1Re-query CCDS DB by GeneID:84253See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 69663.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000435213.6 ENSP00000396205.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435213.6Link to Ensembl Protein Viewer:ENSP00000396205.2Re-query CCDS DB by Nucleotide ID:ENST00000435213Re-query CCDS DB by Protein ID:ENSP00000396205
Original member Current member NCBI NM_001286779.2 NP_001273708.1 Accepted alive Link to Nucleotide Sequence:NM_001286779.2Link to Protein Sequence:NP_001273708.1Re-query CCDS DB by Nucleotide ID:NM_001286779Re-query CCDS DB by Protein ID:NP_001273708Link to BLAST:NP_001273708.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273708.1 991 Q5VVW2-5 991 100% 0 0

Chromosomal Locations for CCDS 69663.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 127263992 127263999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127264952 127265021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127291168 127291242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127311636 127311735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127313441 127313559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127318063 127318127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127320715 127320778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127325069 127325095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127332274 127332349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127333023 127333121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127335230 127335333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127336128 127336236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127338116 127338161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127339645 127339751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127342219 127342334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127344235 127344339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127345403 127345477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127348924 127349035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127353846 127353944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127354294 127354410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127355297 127355472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127357219 127357377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127365300 127365366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127383438 127383545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127385027 127385145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127387193 127387331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127388904 127389119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127390641 127390767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127393083 127393254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2976 nt):
ATGAAAAGCTCTGTCTCGGAAGACCTAGGCTGTAGACGTGGGGATTTCAGTAGGAAACATTATGGATCTG
TGGAGCTGCTTATTTCCAGTGATGCTGATGGAGCCATCCAAAGGGCTGGAAGATTCAGAGTGGAAAATGG
CTCTTCAGATGAGAATGCAACTGCCCTGCCTGGTACTTGGCGAAGAACAGACGTGCACTTAGAGAACCCA
GAATACCACACCAGATGGTATTTCAAATATTTTTTAGGACAAGTCCATCAGAACTACATTGGAAACGATG
CCGAGAAGAGCCCTTTCTTCTTGTCCGTGACCCTTTCTGACCAAAACAATCAACGTGTCCCTCAATACCG
TGCAATTCTTTGGAGAAAAACAGGTACCCAGAAAATATGCCTTCCCTACAGTCCCACAAAAACTCTTTCT
GTGAAGTCCATCTTAAGTGCCATGAATCTGGACAAATTTGAGAAAGGCCCCAGGGAAATTTTTCATCCTG
AAATACAAAAGGACTTGCTGGTTCTTGAAGAACAAGAGGGCTCTGTGAATTTCAAGTTTGGGGTTCTTTT
TGCCAAAGATGGGCAGCTCACTGATGATGAGATGTTCAGCAATGAAATTGGAAGCGAGCCTTTTCAAAAA
TTTTTAAATCTTCTGGGTGACACAATCACTCTAAAGGGCTGGACGGGCTACCGTGGCGGTCTGGATACCA
AAAATGATACCACAGGGATACATTCAGTTTATACTGTGTACCAAGGGCATGAGATCATGTTTCATGTTTC
CACCATGTTGCCATATTCCAAAGAGAACAAACAGCAGGTGGAAAGGAAACGCCACATTGGAAACGATATC
GTCACCATTGTGTTCCAAGAAGGAGAGGAATCTTCTCCTGCCTTTAAGCCTTCCATGATCCGCTCCCACT
TTACACATATTTTTGCCTTAGTGAGATACAATCAACAAAATGACAATTACAGGCTGAAAATATTTTCAGA
AGAGAGCGTACCACTCTTTGGCCCTCCCTTGCCAACTCCACCAGTGTTTACAGACCACCAGGAATTCAGG
GACTTTTTGCTAGTGAAATTAATTAATGGTGAAAAAGCCACTTTGGAAACCCCAACATTTGCCCAGAAAC
GTCGGCGTACCCTGGATATGTTGATTAGATCTTTACACCAGGATTTGATGCCAGATTTGCATAAGAACAT
GCTTAATAGACGATCTTTTAGTGATGTCTTACCAGAGTCACCCAAGTCAGCGCGGAAGAAAGAGGAGGCC
CGCCAGGCGGAGTTTGTTAGAATAGGGCAGGCACTAAAACTGAAATCCATTGTGAGAGGGGATGCTCCAT
CAAGCTTGGCAGCTTCAGGGATCTGTAAAAAAGAGCCGTGGGAGCCCCAGTGTTTCTGCAGTAATTTCCC
TCATGAAGCCGTGTGTGCAGATCCCTGGGGCCAGGCCTTGCTGGTTTCCACTGATGCTGGCGTCTTGCTA
GTGGATGATGACCTTCCATCAGTGCCCGTGTTTGACAGAACTCTGCCAGTGAAGCAAATGCATGTGCTTG
AGACCCTGGACCTTCTGGTTCTCAGAGCAGACAAAGGAAAAGATGCTCGCCTCTTTGTCTTCAGGCTAAG
TGCTCTGCAAAAGGGCCTTGAGGGGAAGCAGGCTGGGAAGAGCAGGTCTGACTGCAGAGAAAACAAGTTG
GAGAAAACAAAAGGCTGCCACCTGTATGCTATTAACACTCACCACAGCAGAGAGCTGAGGATTGTGGTTG
CAATTCGGAATAAACTGCTTCTGATCACAAGAAAACACAACAAGCCAAGCGGGGTCACCAGCACCTCATT
GTTATCTCCCCTGTCTGAGTCACCTGTTGAAGAATTCCAGTACATCAGGGAGATCTGTCTGTCTGACTCT
CCCATGGTGATGACCTTAGTGGATGGGCCAGCTGAAGAGAGTGACAATCTCATCTGTGTGGCTTATCGAC
ACCAATTTGATGTGGTGAATGAGAGCACAGGAGAAGCCTTCAGGCTGCACCACGTGGAGGCCAACAGGGT
TAATTTTGTTGCAGCTATTGATGTGTACGAAGATGGAGAAGCTGGTTTGCTGTTGTGTTACAACTACAGT
TGCATCTATAAAAAGGTTTGCCCCTTTAATGGTGGCTCTTTTTTGGTTCAACCTTCTGCGTCAGATTTCC
AGTTCTGTTGGAACCAGGCTCCCTATGCAATTGTCTGTGCTTTCCCGTATCTCCTGGCCTTCACCACCGA
CTCCATGGAGATCCGCCTGGTGGTGAACGGGAACCTGGTCCACACTGCAGTCGTGCCGCAGCTGCAGCTG
GTGGCCTCCAGGTCGGATATATACTTCACAGCAACTGCAGCTGTGAATGAGGTCTCATCTGGAGGCAGCT
CCAAGGGGGCCAGTGCCCGAAATTCTCCTCAGACACCCCCGGGCCGAGATACTCCAGTATTTCCTTCTTC
CCTGGGGGAAGGTGAAATTCAATCAAAAAATCTGTACAAGATTCCACTTAGAAACCTCGTGGGCAGAAGC
ATCGAACGACCTCTGAAGTCACCCTTAGTCTCCAAGGTCATCACCCCACCCACTCCCATCAGTGTGGGCC
TTGCTGCCATTCCAGTCACGCACTCCTTGTCCCTGTCTCGCATGGAGATCAAAGAAATAGCAAGCAGGAC
CCGCAGGGAACTACTGGGCCTCTCGGATGAAGGTGGACCCAAGTCAGAAGGAGCGCCAAAGGCCAAATCA
AAACCCCGGAAGCGGTTAGAAGAAAGCCAAGGAGGCCCCAAGCCAGGGGCAGTGAGGTCATCTAGCAGTG
ACAGGATCCCATCAGGCTCCTTGGAAAGTGCTTCTACTTCCGAAGCCAACCCTGAGGGGCACTCAGCCAG
CTCTGACCAGGACCCTGTGGCAGACAGAGAGGGCAGCCCGGTCTCCGGCAGCAGCCCCTTCCAGCTCACG
GCTTTCTCCGATGAAGACATTATAGACTTGAAGTAA

Translation (991 aa):
MKSSVSEDLGCRRGDFSRKHYGSVELLISSDADGAIQRAGRFRVENGSSDENATALPGTWRRTDVHLENP
EYHTRWYFKYFLGQVHQNYIGNDAEKSPFFLSVTLSDQNNQRVPQYRAILWRKTGTQKICLPYSPTKTLS
VKSILSAMNLDKFEKGPREIFHPEIQKDLLVLEEQEGSVNFKFGVLFAKDGQLTDDEMFSNEIGSEPFQK
FLNLLGDTITLKGWTGYRGGLDTKNDTTGIHSVYTVYQGHEIMFHVSTMLPYSKENKQQVERKRHIGNDI
VTIVFQEGEESSPAFKPSMIRSHFTHIFALVRYNQQNDNYRLKIFSEESVPLFGPPLPTPPVFTDHQEFR
DFLLVKLINGEKATLETPTFAQKRRRTLDMLIRSLHQDLMPDLHKNMLNRRSFSDVLPESPKSARKKEEA
RQAEFVRIGQALKLKSIVRGDAPSSLAASGICKKEPWEPQCFCSNFPHEAVCADPWGQALLVSTDAGVLL
VDDDLPSVPVFDRTLPVKQMHVLETLDLLVLRADKGKDARLFVFRLSALQKGLEGKQAGKSRSDCRENKL
EKTKGCHLYAINTHHSRELRIVVAIRNKLLLITRKHNKPSGVTSTSLLSPLSESPVEEFQYIREICLSDS
PMVMTLVDGPAEESDNLICVAYRHQFDVVNESTGEAFRLHHVEANRVNFVAAIDVYEDGEAGLLLCYNYS
CIYKKVCPFNGGSFLVQPSASDFQFCWNQAPYAIVCAFPYLLAFTTDSMEIRLVVNGNLVHTAVVPQLQL
VASRSDIYFTATAAVNEVSSGGSSKGASARNSPQTPPGRDTPVFPSSLGEGEIQSKNLYKIPLRNLVGRS
IERPLKSPLVSKVITPPTPISVGLAAIPVTHSLSLSRMEIKEIASRTRRELLGLSDEGGPKSEGAPKAKS
KPRKRLEESQGGPKPGAVRSSSSDRIPSGSLESASTSEANPEGHSASSDQDPVADREGSPVSGSSPFQLT
AFSDEDIIDLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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