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Report for CCDS70238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70238.1 Public Mus musculus 11 Tlcd2 23 108 98 CCDS HistoryNCBI Gene:380712Re-query CCDS DB by CCDS ID:70238.1Re-query CCDS DB by GeneID:380712See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70238.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108435.1 ENSMUSP00000104074.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108435.1Link to Ensembl Protein Viewer:ENSMUSP00000104074.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108435Re-query CCDS DB by Protein ID:ENSMUSP00000104074
Original member Current member NCBI NM_001291156.1 NP_001278085.1 Accepted alive Link to Nucleotide Sequence:NM_001291156.1Link to Protein Sequence:NP_001278085.1Re-query CCDS DB by Nucleotide ID:NM_001291156Re-query CCDS DB by Protein ID:NP_001278085Link to BLAST:NP_001278085.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278085.1 188 Q8VC26-2 188 100% 0 0

Chromosomal Locations for CCDS 70238.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75468205 75468377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75468557 75468639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75468842 75468924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75469472 75469618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75470400 75470480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGCATCCTGGGGACTCCTTGTGGCTGGCGCTTCCTTCACGGCGTTTCGGGGACTGCACTGGGGGCTGC
AGCTGCTGCCCACCCCGAAATCTGTTCGGGACCGCTGGATGTGGCGGAACATTTTCGTTTCGCTGATACA
CAGCCTACTCTCTGGAGTAGGGGCGCTGGTCGGGCTGTGGCAGTTTCCTCAAATGGTCACCGACCCAATT
AATGATCACCCACCGTGGGCACGGGTCCTAGTAGCAGTGTCAGTGGGTTATTTCGCTGCAGATGGAGTTG
ATATGCTGTGGAACCAGACATTGGCCCAGGCCTGGGACCTTCTCTGTCACCATTTGGCGGTAGTGAGCTG
CCTCAGCACCGCTGTTGTGTCTGGCCACTATGTGGGCTTCTCTATGGTATCCCTGCTTCTGGAGCTGAAC
TCCATCTGTTTGCATCTACGGAAGCTACTGCTGCTCTCCCATAAGGCCCCATCCTTGGCCTTCAGAGCTC
CAGATACCTGTACTCCACTGCTGCTGCTGCTCTTGGTGGTCATCTCATGGTACTGGCATCTCCAAAACGC
TGCATGA

Translation (188 aa):
MASWGLLVAGASFTAFRGLHWGLQLLPTPKSVRDRWMWRNIFVSLIHSLLSGVGALVGLWQFPQMVTDPI
NDHPPWARVLVAVSVGYFAADGVDMLWNQTLAQAWDLLCHHLAVVSCLSTAVVSGHYVGFSMVSLLLELN
SICLHLRKLLLLSHKAPSLAFRAPDTCTPLLLLLLVVISWYWHLQNAA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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