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Report for CCDS7041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7041.1 Public Homo sapiens 9 TOR4A 24 110 108 CCDS HistoryNCBI Gene:54863Re-query CCDS DB by CCDS ID:7041.1Re-query CCDS DB by GeneID:54863See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7041.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357503.3 ENSP00000350102.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357503.3Link to Ensembl Protein Viewer:ENSP00000350102.2Re-query CCDS DB by Nucleotide ID:ENST00000357503Re-query CCDS DB by Protein ID:ENSP00000350102
Original member Current member NCBI NM_017723.3 NP_060193.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017723.3Link to Protein Sequence:NP_060193.2Re-query CCDS DB by Nucleotide ID:NM_017723Re-query CCDS DB by Protein ID:NP_060193Link to BLAST:NP_060193.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060193.2 423 Q9NXH8 423 100% 0 0

Chromosomal Locations for CCDS 7041.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 137278690 137279961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGACCGCGGCCAGCCCAGCCTGGAGCCTGCTGCCGCGGCCCCCCGAGCCTCGGGCCGGTGCGTGATCG
CGCCCGTGCGCGCTGTGCTCCGCCTGCGCCGCCGGGTGTGTGTCCTACGCAAACGGCGCCTCCTGCAGCC
GGGTGGGGGGCCCGACGTCGGGACCGGGGCGCCCAGGCCGGGCTGCAGCCCCCGGGCACCGCGCGCGGAC
CTGGACCAGCCAAAGTTCTTCACCTTCGACAGCCCCGCGGAGCTACCCTCCAGGACGCCACGCAAGAAGC
GCCGGCGCAGCCGCCTGGTGCTTTACCCGGAGACCTCGCGCAAGTATCGGCCGCGCGTGGAGCACAGGAG
CCGCGCGCAGCGCTGCCTTCTGCTGCTAGTCGCCATCGTGGGCTTCCAAGTTCTCAACGCTATCGAGAAC
CTGGACGATAACGCGCAGCGCTATGACCTCGACGGGCTGGAGAAAGCGCTGCAGCGCGCGGTGTTCGGCC
AGCCCGCTGCCGTATCGCGCATCGTGGCGCTGATGCGGGACTACCTGGCCACGCATGTGCACAGTCGTCC
GCTCCTCCTGGCGCTGCACGGGCCCAGTGGCGTGGGCAAGAGCCACGTGGGCCGCCTGCTGGCGCGCCAC
TTCCGCTCGGTGCTGGAGGACAGCGCGCTCGTGCTGCAATACCATGCGCGGCACCACTGCCCCGAGGCGC
GCGCCGCACAGGACTGCCGCGAGGAGCTGGCGCGGCGCGTGGCCGACGTGGTGGCGCGGGCCGAAGCGGA
GGAGAAGACCCCACTCTTGGTGCTGGACGACGTGGAGCTCATGCCGCGGCCGCTGCTGGACGAGCTGCAC
GGCTTCCTGCAGCCGCAGCGCTCCCACCACTTCCACAACGCCATCTACGTGCTCCTCAGTGGCGCGGGTG
GCGCCGAGGTCACGCGCTTCGTGCTGCAGAACGCGTCCCGCGCGCTGCCCCTGCGCCCCGACGGCTTCCG
CAGTGCCGAGGCCGCAGCGGCGCAGGCGGAAGAAGACCTGCGCGCCAGCCTGCTGGCTGTGCTGTCCCGG
GAGCATCCGCTGTGGCAGGCCGCGGCCATCGTGCCGTTTCTGCTGCTGGACAAGCGGGATGTGGTCAGCT
GCTTCCGGGACGAGATGGCGGGTGAGGGCTTCTTTCCTGACCAGGCCCGCGCGGAGAACCTGGCCGCGCA
GCTCAGCTTCTACCGCGTGGCTGGCCGCGAGTTTGCCGTCACCGGCTGCAAGCAGGTGGTGGCCACGGTG
AACCTCCTGTAG

Translation (423 aa):
MDRGQPSLEPAAAAPRASGRCVIAPVRAVLRLRRRVCVLRKRRLLQPGGGPDVGTGAPRPGCSPRAPRAD
LDQPKFFTFDSPAELPSRTPRKKRRRSRLVLYPETSRKYRPRVEHRSRAQRCLLLLVAIVGFQVLNAIEN
LDDNAQRYDLDGLEKALQRAVFGQPAAVSRIVALMRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARH
FRSVLEDSALVLQYHARHHCPEARAAQDCREELARRVADVVARAEAEEKTPLLVLDDVELMPRPLLDELH
GFLQPQRSHHFHNAIYVLLSGAGGAEVTRFVLQNASRALPLRPDGFRSAEAAAAQAEEDLRASLLAVLSR
EHPLWQAAAIVPFLLLDKRDVVSCFRDEMAGEGFFPDQARAENLAAQLSFYRVAGREFAVTGCKQVVATV
NLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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