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Report for CCDS71033.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
71033.1 |
Public |
Mus musculus |
2 |
Pbx3 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:18516](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:71033.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:18516](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 71033.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000113132.8 |
ENSMUSP00000108757.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000113132.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000108757.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000113132](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000108757](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001290576.1 |
NP_001277505.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001290576.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001277505.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001290576](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001277505](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001290576.2 |
NP_001277505.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001290576.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001277505.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001290576](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001277505](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001277505.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001277505.1 |
351 |
O35317-2 |
351 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 71033.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1056 nt): ATGGACGATCAATCCAGGATGCTGCAGACTCTGGCCGGGGTGAACCTGGCCGGCCACTCGGTCCAGGGGG GTATGGCTCTGCCGCCTCCCCCTCACGGCCACGAAGGGGCGGACGGCGACGGCAGGAAGCAGGACATCGG CGACATCCTCCACCAGATCATGACCATCACCGACCAGAGCTTGGACGAGGCGCAAGCAAAGAAACATGCT CTGAACTGTCACAGAATGAAACCGGCGCTCTTCAGCGTCTTGTGTGAGATCAAAGAGAAAACAGGTCTCA GCATCAGAGGAGCCCAGGAGGAAGACCCTCCCGACCCCCAGCTAATGAGACTGGACAATATGCTTTTGGC AGAAGGGGTTTCAGGTCCTGAGAAAGGTGGGGGATCGGCGGCAGCAGCTGCAGCCGCGGCAGCCTCTGGA GGTTCTTCAGATAACTCTATTGAACACTCAGATTACAGAGCCAAATTGACCCAGATCAGACAAATCTATC ACACAGAACTGGAGAAATATGAACAGGCATGTAATGAATTCACAACACATGTGATGAACCTTCTCCGAGA ACAGAGTAGAACGCGTCCCATTTCCCCGAAAGAGATCGAAAGGATGGTGGGCATCATCCATCGGAAATTT AGTTCCATTCAGATGCAGCTCAAGCAAAGCACGTGTGAAGCAGTTATGATTTTGAGATCAAGGTTCCTTG ATGCCAGACGGAAAAGGCGTAACTTCAGTAAACAGGCTACGGAAATCTTGAATGAATATTTTTACTCACA CCTCAGCAACCCCTACCCCAGTGAAGAAGCCAAAGAGGAGCTGGCCAAGAAATGCAGCATCACAGTATCA CAGGTATCCAACTGGTTTGGCAACAAACGAATCAGGTACAAGAAGAACATCGGCAAATTTCAAGAGGAGG CCAATCTCTATGCTGCAAAAACAGCCGTGACAGCCGCACATGCAGTGGCTGCAGCCGTGCAGAACAACCA GACCAACTCACCCACCACGCCAAACTCTGGTGGATACCCTCCGTCATGTTATCAATCAGACGGGAGGCTA CAGTGA
Translation (351 aa): MDDQSRMLQTLAGVNLAGHSVQGGMALPPPPHGHEGADGDGRKQDIGDILHQIMTITDQSLDEAQAKKHA LNCHRMKPALFSVLCEIKEKTGLSIRGAQEEDPPDPQLMRLDNMLLAEGVSGPEKGGGSAAAAAAAAASG GSSDNSIEHSDYRAKLTQIRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVGIIHRKF SSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVS QVSNWFGNKRIRYKKNIGKFQEEANLYAAKTAVTAAHAVAAAVQNNQTNSPTTPNSGGYPPSCYQSDGRL Q
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