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Report for CCDS71209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71209.1 Public Mus musculus 2 Gm14325 23 108 98 CCDS HistoryNCBI Gene:329575Re-query CCDS DB by CCDS ID:71209.1Re-query CCDS DB by GeneID:329575See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108939.8 ENSMUSP00000104567.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108939.8Link to Ensembl Protein Viewer:ENSMUSP00000104567.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108939Re-query CCDS DB by Protein ID:ENSMUSP00000104567
Original member Current member NCBI NM_001024849.3 NP_001020020.2 Accepted alive Link to Nucleotide Sequence:NM_001024849.3Link to Protein Sequence:NP_001020020.2Re-query CCDS DB by Nucleotide ID:NM_001024849Re-query CCDS DB by Protein ID:NP_001020020Link to BLAST:NP_001020020.2

Chromosomal Locations for CCDS 71209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 177831791 177833096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177834251 177834311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177834520 177834646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177840237 177840239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGATTTAATCACCTATGATGACGTGCATGTGAACTTTACTCAGGAAGAATGGGCTTTGCTGGATCCTT
CTCAGAAGAGTCTCTACAAAGGTGTGATGCTAGAGACCTATAGGAATCTCACAGCTATAGGTTACATTTG
GGAAGAACATACAATTGAAGACCATCTTCAAACTTCTAGAAGTCATGGAAGGCATGAAAGAAGTTGTTCT
GCAGAGCAACCCTCTGAGTTTATTCAATGTGGTAAAGCCTTTGCATATGAGAGTGGTAGACAAAGGCATC
AAATTAAACATACTGGAGAGAAACACCATGACTGTAACCAATGTGGTAAGGACTTTAGAACATGGAATGT
CCTGCAAATACATAAGCGAACACATACAGGAGAGAAACCCTATGACTGTAAACAATGTGGTAAAGCCTTT
GCAAGAAGCTGTCATCTCCGAATACATAATCGAACACATGCAGGAGAGAAACAGTATGAATGTAACCAAT
GTGGTAAAGCTTTTAAAAGAAGGAGTGACCTCCAAATACATAAGCGAACACATACAGGAGAGAAACCCTA
TGAATGTAAACAATGTGGAAAAGCCTTTGTAAGCAGTGGTGAACTCCAAAAACATAAACGAACACATACA
GGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTTTCACAAAGCAGTCATCTCCGAATACATA
AGCGAACACATACAGGAGAGAAACCCTATGAATGTAACCAATGTGGAAAAGCCTTTGCAAGAAGTGGTGA
CCTCCAAAAACATAAGCGAACACATACAGGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTT
GCACATAGCAGTCATCTCCACATACATGAGCGAAGACATACAGGAGACAAACCCTATGAATGTAAACAAT
GTGGTAAAGCCTTTGCAGTATTCTATACTCTCCAAATGCATAAGCGAACACATACAGGAGACAAACCCTA
TGAATGTAAACAATGTGGTAAAGCCTTTACAGTAATCTATACTCTCCAAATGCATAAGCAAACACATACA
GGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAACCTTTTCACAAAGCAGACATCTCCGAATACATA
AGCGAACACATACAGGAGAGAAACCCTATGAATGTAACCAATGTGGTAAAGCCTTTGCAAGAAGTGGTGA
CCAACAAGAACATAAGCGAACACATACAGGAGAGAAACCCTATGAATGTAACCAATGTGGTAAAGCTTTT
ATAAGAAGGAGAGTCCTCCAAATACATAAGCGAACACATACAGGAGAGAAACCATATGAATGTAAACAAT
GTGGTAAAGCCTTCGCAAGCAGTAGTGACCTCCAAAAACATAAACGGACACATTCCGGAGAGAAACCCTA
TGAATGTAAACAATGTGGTAAAGCTTTTGCACAAAGCAGTCATCTCCGAATACATAAGCAAACACATACA
GGAGAGAGACCCTATGAATGTAACTAG

Translation (498 aa):
MDLITYDDVHVNFTQEEWALLDPSQKSLYKGVMLETYRNLTAIGYIWEEHTIEDHLQTSRSHGRHERSCS
AEQPSEFIQCGKAFAYESGRQRHQIKHTGEKHHDCNQCGKDFRTWNVLQIHKRTHTGEKPYDCKQCGKAF
ARSCHLRIHNRTHAGEKQYECNQCGKAFKRRSDLQIHKRTHTGEKPYECKQCGKAFVSSGELQKHKRTHT
GEKPYECKQCGKAFSQSSHLRIHKRTHTGEKPYECNQCGKAFARSGDLQKHKRTHTGEKPYECKQCGKAF
AHSSHLHIHERRHTGDKPYECKQCGKAFAVFYTLQMHKRTHTGDKPYECKQCGKAFTVIYTLQMHKQTHT
GEKPYECKQCGKTFSQSRHLRIHKRTHTGEKPYECNQCGKAFARSGDQQEHKRTHTGEKPYECNQCGKAF
IRRRVLQIHKRTHTGEKPYECKQCGKAFASSSDLQKHKRTHSGEKPYECKQCGKAFAQSSHLRIHKQTHT
GERPYECN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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