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Report for CCDS71316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71316.1 Public Mus musculus 3 Pitx2 23 108 98 CCDS HistoryNCBI Gene:18741Re-query CCDS DB by CCDS ID:71316.1Re-query CCDS DB by GeneID:18741See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172645.7 ENSMUSP00000134692.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172645.7Link to Ensembl Protein Viewer:ENSMUSP00000134692.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172645Re-query CCDS DB by Protein ID:ENSMUSP00000134692
Original member Current member NCBI NM_001286942.1 NP_001273871.1 Accepted alive Link to Nucleotide Sequence:NM_001286942.1Link to Protein Sequence:NP_001273871.1Re-query CCDS DB by Nucleotide ID:NM_001286942Re-query CCDS DB by Protein ID:NP_001273871Link to BLAST:NP_001273871.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273871.1 304 P97474-4 304 100% 0 0

Chromosomal Locations for CCDS 71316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129203947 129203992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129204479 129204577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129215639 129215844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129218334 129218897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGGAGACCAATTGTCGCAAACTAGTGTCGGCCTGCGTGCAATTAGACTCCGAAATCAAAAAGGTCGAGT
TCACGGACTCTCCCAAGAGCCGGAAAGAGTCGGCCAGCAGCAAGCTGTTCCCGCGGCAGCACCCCGGCGC
CAATGAGAAAGATAAGGGCCAGCAAGGAAAGAATGAGGATGTGGGCGCCGAGGACCCGTCCAAGAAGAAG
CGGCAACGCCGGCAGAGGACTCATTTCACTAGCCAGCAGCTGCAGGAGCTGGAAGCCACTTTCCAGAGAA
ACCGCTACCCAGACATGTCCACTCGCGAAGAAATCGCCGTGTGGACCAACCTTACGGAAGCCCGAGTCCG
GGTTTGGTTCAAGAATCGCCGGGCCAAATGGAGAAAGCGGGAACGCAACCAGCAGGCCGAGCTGTGCAAG
AATGGCTTTGGGCCGCAGTTCAACGGGCTCATGCAGCCCTACGATGACATGTACCCCGGCTATTCGTACA
ACAATTGGGCTGCCAAGGGCCTCACGTCAGCGTCTCTGTCCACCAAGAGCTTCCCCTTCTTCAACTCCAT
GAACGTCAATCCCCTGTCCTCTCAGAGTATGTTTTCCCCGCCCAACTCCATCTCATCTATGAGTATGTCG
TCCAGCATGGTGCCCTCCGCGGTGACCGGCGTCCCGGGCTCCAGCCTCAATAGCCTGAATAACTTGAACA
ACCTGAGCAGCCCGTCGCTGAATTCCGCGGTGCCCACGCCCGCCTGTCCTTACGCGCCGCCGACTCCTCC
GTACGTTTATAGGGACACATGTAACTCGAGCCTGGCCAGCCTGAGACTGAAAGCAAAGCAGCACTCCAGC
TTCGGCTACGCCAGCGTGCAGAACCCGGCCTCCAACCTGAGTGCTTGCCAGTATGCAGTCGACCGGCCGG
TGTGA

Translation (304 aa):
METNCRKLVSACVQLDSEIKKVEFTDSPKSRKESASSKLFPRQHPGANEKDKGQQGKNEDVGAEDPSKKK
RQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCK
NGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMS
SSMVPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSS
FGYASVQNPASNLSACQYAVDRPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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