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Report for CCDS71809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71809.1 Public Mus musculus 6 Brpf1 23 108 98 CCDS HistoryNCBI Gene:78783Re-query CCDS DB by CCDS ID:71809.1Re-query CCDS DB by GeneID:78783See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71809.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113119.7 ENSMUSP00000108744.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113119.7Link to Ensembl Protein Viewer:ENSMUSP00000108744.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113119Re-query CCDS DB by Protein ID:ENSMUSP00000108744
Original member Current member NCBI NM_001282126.1 NP_001269055.1 Accepted alive Link to Nucleotide Sequence:NM_001282126.1Link to Protein Sequence:NP_001269055.1Re-query CCDS DB by Nucleotide ID:NM_001282126Re-query CCDS DB by Protein ID:NP_001269055Link to BLAST:NP_001269055.1

Chromosomal Locations for CCDS 71809.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113309813 113310408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113314591 113315550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113316528 113316690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113317060 113317191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113317548 113317676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113318412 113318721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113319038 113319361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113319668 113319952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113320434 113320581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113321729 113322086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113322413 113322567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113323983 113324166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3744 nt):
ATGGGGGTGGACTTTGACGTGAAGACCTTCTGCCACAATTTGCGGGCAACTAAGCCACCATATGAGTGCC
CTGTGGAGACTTGCCGCAAGGTTTACAAGAGTTACAGTGGTATCGAGTACCACCTGTACCACTATGACCA
CGACAGCCCACCACCCCCACAGCAGACCCCACTGCGCAAGCACAAAAAGAAAGGGCGCCAGTCACGACCA
GCCAACAAGCAGTCACCCAGCCCCTCTGAAGTCTCACAGTCACCAGGCCGAGAGGTGATGAGCTATGCTC
AGGCCCAGCGCATGGTAGAAGTGGACCTTCATGGCCGTGTCCACCGAATCAGCATCTTTGACAACTTGGA
TGTGGTGTCAGAGGATGAGGAGGCCCCTGAGGAGGCCCCTGAGAATGGCAGCAACAAGGAAAACACTGAG
ACACCTGCGGCTACACCTAAGTCAGGCAAGCATAAGAACAAGGAGAAACGAAAAGACTCTAACCACCACC
ATCACAGCGCTCCTGCCAGTGCTGCTCCCAAATTGCCTGAGGTGGTGTATCGTGAGCTAGAGCAAGATAC
CCCTGACGCACCACCCCGGCCCACTTCCTACTACCGGTACATCGAGAAATCTGCAGAGGAGCTGGATGAG
GAGGTGGAGTATGACATGGATGAAGAGGACTATATCTGGCTGGATATCATGAATGAGCGGCGGAAGACTG
AGGGTGTAAGTCCCATCCCACAAGAGATCTTTGAGTACTTAATGGACCGTTTGGAGAAGGAGTCGTACTT
TGAGAGTCACAATAAAGGTGACCCCAATGCACTAGTGGATGAAGATGCCGTGTGCTGTATCTGCAATGAT
GGCGAGTGCCAGAACAGCAATGTTATCCTCTTCTGTGACATGTGTAACTTGGCTGTGCACCAGGAGTGCT
ACGGTGTCCCCTATATCCCTGAAGGCCAGTGGCTGTGCCGCCGTTGCCTGCAGTCACCTTCTCGTGCAGT
GGATTGTGCTCTGTGCCCCAATAAGGGTGGTGCCTTCAAGCAGACAGATGATGGCCGCTGGGCCCACGTG
GTGTGTGCCTTGTGGATCCCTGAGGTTTGCTTTGCCAACACAGTCTTCCTAGAACCTATTGACAGCATTG
AGCACATCCCACCAGCTCGGTGGAAGCTCACCTGCTACATTTGTAAACAGCGGGGCTCTGGAGCCTGCAT
CCAGTGCCATAAGGCCAATTGCTACACAGCCTTCCATGTGACATGTGCCCAACAAGCTGGCCTTTACATG
AAGATGGAACCTGTGCGGGAGACAGGTGCCAATGGTACCTCCTTTAGCGTCCGCAAGACAGCCTACTGTG
ACATCCACACACCCCCAGGTTCTGCTCGTCGCCTGCCTGCCCTATCCCACAGTGAGGGTGAGGAAGAAGA
GGATGAAGAAGAAGATGAGGGTAAAAGCTGGAGCTCAGAGAAGGTCAAGAAGGCCAAGGCCAAGTCTCGG
ATTAAGATGAAGAAAGCTCGGAAGATCTTGGCAGAGAAGAGGGCAGCAGCACCTGTGGTGTCCGTGCCCT
GCATCCCGCCACACAGGCTCAGTAAGATCACCAACCGCCTGACCATCCAGAGGAAGAGCCAGTTCATGCA
GAGGCTGCACAGCTACTGGACTCTGAAACGACAATCACGGAATGGGGTCCCACTACTCAGGCGCCTACAA
ACACACCTTCAGTCTCAGAGGAACTGTGAACAAGTTGGGAGAGATTCTGATGATAAAAACTGGGCCCTCA
AAGAACAGCTCAAGTCCTGGCAGAGACTGCGGCATGACCTGGAGCGAGCTCGGCTGCTGGTGGAGCTGAT
CCGCAAGCGAGAGAAACTAAAAAGGGAGACGATCAAGATCCAGCAGATTGCCATGGAGATGCAGCTGACC
CCTTTCCTCATCCTCCTCCGAAAAACCTTGGAGCAGCTCCAAGAGAAGGACACAGGCAACATCTTCAGCG
AGCCGGTCCCTCTGTCTGAGGTACCCGACTACCTAGACCACATCAAAAAGCCCATGGACTTTTTCACCAT
GAAGCAGAACTTGGAGGCTTACCGCTACTTGAACTTTGATGATTTTGAGGAGGACTTCAACCTCATTGTC
AGCAACTGCCTAAAGTATAATGCCAAGGACACCATCTTCTACAGGGCAGCAGTGCGACTCCGTGAGCAGG
GTGGTGCTGTGCTCCGTCAAGCCCGGCGACAGGCAGAAAAAATGGGCATTGACTTTGAGACGGGCATGCA
TATCCCTCACAACCTGGCCGGAGATGAGGTCTCACACCACACTGAAGATGCAGTAGAGGAAGAACGGCTG
GTCCTGCTGGAGAACCAGAAACACCTGCCAGTAGAAGAACAGCTGAAGTTGTTGCTGGAGAGGCTGGATG
AAGTCAATGCCAGCAAGCAGAGTGTGGGCCGCTCTCGGCGTGCAAAAATGATCAAGAAGGAGATGACAGC
ATTGCGGCGGAAGCTTGCTCACCAGCGGGAGACTGGCCGGGATGGGCCTGAGCGTCATGGCCCCTCAGGT
CGGGGCAATCTGACACCCCACCCAGCAGCCTGTGACAAAGATGGACAGACCGACAGTGCTGCAGAAGAGA
GCAGCAGCCAGGAAACAAGCAAAGGCCTGGGTCCCAACATGTCCTCAACCCCCGCACATGAGGTGGGCAG
GAGAACCTCAGTTCTGTTCTCCAAAAAGAACCCGAAGACAGCTGGACCGCCCAAGAGGCCGGGCCGGCCC
CCAAAAAACCGGGAGAGCCAGATGACCCCCAGCCACGGAGGCAGTCCTGTGGGGCCCCCTCAGCTCCCCA
TCATGGGCTCCCTACGTCAGCGCAAGCGGGGTAGGAGCCCCCGGCCCAGTTCAAGCTCAGACAGCGACAG
TGATAAGTCCACAGAAGATCCCCCAATGGACTTACCAGCCAATGGCTTCAGCAGTGGGAACCAGCCAGTG
AAGAAGAGTTTCTTGGTGTACCGTAATGACTGCAACCTTCCCCGAAGCAGCTCAGACTCTGAGTCCAGCA
GCAGCAGCAGCAGCAGTGCAGCCTCAGACCGGACCAGCACAACTCCCTCAAAACAAGGCAGGGGCAAGCC
CTCTTTCTCTCGGGGCACATTCCCAGAAGACAGTAGTGAAGATACCTCAGGCACTGAGAATGAGGCCTAC
TCCGTGGGCACTGGCCGCGGCGTGGGCCACAGCAGTAAGTACCCTCACCCAAAGTCAGGGGTGCTGGGGA
CCCAGTTTCAAGGCCTTGCCAGCCCCCCAGCTGCTGATCCGCCCCCTCTCTCCCGTTCCTGTGAAGTGGT
AAGAAAGAGTCTGGGTCGAGGAGCTGGCTGGCTGTCAGAGGATGAGGACTCCCCGTTGGATGCTCTGGAC
CTCGTGTGGGCCAAATGCCGAGGCTATCCATCATACCCAGCTCTGATCATTGATCCAAAGATGCCCCGAG
AAGGTATGTTCCACCATGGGGTTCCTATCCCTGTACCACCACTGGAGGTTCTAAAACTTGGGGAACAAAT
GACACAGGAAGCCCGAGAGCATCTCTACCTCGTTCTCTTCTTTGACAACAAACGAACCTGGCAGTGGCTG
CCCCGGACTAAGCTTGTTCCTCTGGGTGTGAACCAGGATCTAGACAAAGAGAAGATGCTGGAGGGCCGCA
AGTCCAACATCCGCAAGTCAGTGCAGATTGCTTACCACAGGGCTCTGCAGCACCGAAGCAAGGTGCAGGG
TGAGCAGAGCAGCGAGACCAGCGATAGTGACTGA

Translation (1247 aa):
MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKKGRQSRP
ANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTE
TPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDE
EVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICND
GECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHV
VCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYM
KMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSR
IKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQ
THLQSQRNCEQVGRDSDDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLT
PFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIV
SNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEVSHHTEDAVEEERL
VLLENQKHLPVEEQLKLLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSG
RGNLTPHPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRP
PKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSSGNQPV
KKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAY
SVGTGRGVGHSSKYPHPKSGVLGTQFQGLASPPAADPPPLSRSCEVVRKSLGRGAGWLSEDEDSPLDALD
LVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWL
PRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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