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Report for CCDS71955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71955.1 Public Mus musculus 7 Pnkp 23 108 98 CCDS HistoryNCBI Gene:59047Re-query CCDS DB by CCDS ID:71955.1Re-query CCDS DB by GeneID:59047See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098478.6 ENSMUSP00000096078.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098478.6Link to Ensembl Protein Viewer:ENSMUSP00000096078.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098478Re-query CCDS DB by Protein ID:ENSMUSP00000096078
Original member Current member NCBI NM_001290766.1 NP_001277695.1 Accepted alive Link to Nucleotide Sequence:NM_001290766.1Link to Protein Sequence:NP_001277695.1Re-query CCDS DB by Nucleotide ID:NM_001290766Re-query CCDS DB by Protein ID:NP_001277695Link to BLAST:NP_001277695.1

Chromosomal Locations for CCDS 71955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44857404 44857554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44858163 44858209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44858453 44858749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44859723 44859802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44859888 44859945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44860360 44860431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44860863 44860911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44860989 44861059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44861147 44861239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44861318 44861414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44861500 44861561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44861649 44861758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44862194 44862281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44862366 44862427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44862499 44862622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGTCACAGCTTGGATCCCGGGGCCGCCTGTGGCTGCAGAGCCCCACCGGTGGGCCGCCCCCTATATTCC
TGCCGTCGGATGGCCAAGCCCTGGTCCTCGGTCGGGGACCCCTGACCCAAGTGACGGACCGGAAGTGCTC
CCGAAACCAAGTGGAGCTGATTGCAGACCCTGAAAGCCGGACAGTGGCAGTGAAACAGCTGGGTGTTAAC
CCGTCAACTGTTGGGGTCCAGGAGTTGAAGCCAGGACTGTCTGGCTCTCTAAGCTTGGGGGATGTCCTTT
ATCTGGTTAATGGCCTATATCCCCTGACCCTGCGTTGGGAAGAGCTCAGCACATCAGGATCCCAGCCAGA
TGCTCCACCAGACACTCCTGGGGATCCGGAGGAGGGAGAGGATACTGAGCCTCAGAAAAAGCGAGTTCGG
AAATCCTCTCTTGGCTGGGAGAGCTTAAAGAAGTTACTGGTGTTCACAGCGTCTGGGGTGAAGCCCCAGG
GCAAGGTGGCTGCCTTTGACCTAGATGGGACCCTCATCACCACCCGCTCTGGAAAGGTCTTCCCCACTAG
CCCTAGTGACTGGAGGATTCTGTACCCAGAGATTCCAAAGAAGCTCCAGGAGCTGGCTGCTGAAGGCTAC
AAGGTGCTGGTGGCAACACATGCAGGTCTAAACCGAAAGCCAGTGAGTGGCATGTGGGACCATCTGCAGG
AGCAGGCCAACGAGGGCATCCCCATCTCGGTAGAGGACAGTGTCTTCGTGGGAGATGCAGCAGGGCGCCT
AGCCAACTGGGCACCGGGGAGGAAAAAAAAGGATTTCTCTTGTGCAGACCGCCTGTTCGCCCTTAACGTC
GGCCTGCCCTTTGCCACTCCGGAAGAGTTTTTCCTTAAGTGGCCGGCTGCCCGCTTTGAGCTTCCAGCTT
TCGACCCGAGGACTATCTCCAGTGCTGGGCCCCTCTACCTTCCAGAGTCCAGCTCTCTCCTGAGCCCCAA
CCCAGAGGTGGTGGTCGCAGTAGGATTCCCTGGGGCCGGCAAGTCCACTTTCATCCAGGAGCACCTAGTG
TCAGCTGGCTACGTCCATGTGAACAGGGACACGCTGGGCTCGTGGCAGCGCTGTGTGAGCTCATGCCAGG
CGGCACTGAGGCAGGGGAAGCGAGTCGTGATTGACAACACCAACCCAGATGTCCCAAGTCGGGCCAGGTA
CATCCAATGTGCCAAAGATGCAGGTGTGCCCTGCCGCTGTTTCAACTTCTGTGCTACAATAGAGCAGGCA
CGCCACAACAACAGGTTTCGTGAGATGACCGACCCTTCGCATGCACCTGTGTCGGACATGGTCATGTTTA
GCTACAGGAAGCAGTTTGAGCCGCCCACACTGGCTGAAGGCTTCCTGGAGATCCTTGAGATTCCATTCCG
GTTACAGGAGCATCTGGACCCGGCACTGCAGCGACTGTACCGCCAGTTTTCCGAGGGCTGA

Translation (486 aa):
MSQLGSRGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVN
PSTVGVQELKPGLSGSLSLGDVLYLVNGLYPLTLRWEELSTSGSQPDAPPDTPGDPEEGEDTEPQKKRVR
KSSLGWESLKKLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY
KVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNV
GLPFATPEEFFLKWPAARFELPAFDPRTISSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLV
SAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQA
RHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFSEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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