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Report for CCDS71982.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71982.1 Public Mus musculus 7 Isg20 23 108 98 CCDS HistoryNCBI Gene:57444Re-query CCDS DB by CCDS ID:71982.1Re-query CCDS DB by GeneID:57444See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71982.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121645.7 ENSMUSP00000112621.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121645.7Link to Ensembl Protein Viewer:ENSMUSP00000112621.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121645Re-query CCDS DB by Protein ID:ENSMUSP00000112621
Original member Current member NCBI NM_001291220.1 NP_001278149.1 Accepted alive Link to Nucleotide Sequence:NM_001291220.1Link to Protein Sequence:NP_001278149.1Re-query CCDS DB by Nucleotide ID:NM_001291220Re-query CCDS DB by Protein ID:NP_001278149Link to BLAST:NP_001278149.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278149.1 300 Q9JL16-1 300 100% 0 0

Chromosomal Locations for CCDS 71982.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 78914347 78914574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78916533 78916733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78919712 78920185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGCAGGCATCCCAGAGGTGGTGGCCATGGACTGTGAGATGGTGGGGCTTGGGCCTCAAAGGGTGAGTG
GCCTCGCCCGCTGCAGCATTGTGAACATCCATGGCGCAGTCCTGTATGACAAGTACATCCGACCCGAGGG
AGAGATCACGGACTACAGAACCCAAGTCAGCGGGGTCACGCCTCAGCACATGGTGAGGGCCACGCCATTT
GGTGAAGCCAGGCTAGAGATCCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCATGACCTGAAGCACG
ACTTCAATGCCCTGAAGGAGGATATGAGCAAGTACACCATCTATGACACGTCCACAGACAGGCTGCTGTG
GCATGAGGCCAAGCTGCAGTACTACAGCCGAGTGTCCCTGAGGCTGCTGTGTAAGCGCCTGCTACACAAG
AACATCCAGGTCCTGCCTGGCAGCCTCTTGGGGGTTGGAGGATGCATCTTGCCAGGCACTGACATCCTTC
ATCTTCTGCTCTATGTCGGAATGGTCAGGATTGCTGATCTCCGCTTGCTGACGCCCTTTCTACCTCCGAG
CTGCCTCGCTTGCCCACTGCTCCCGGAGAGTCTTGCTTCTGCTCGCTCGCACGCTGTTATTTCTGCCCTG
TCCAGCTCTAGTCACCTGCTGACACCCCTCCCAAACCCGAGTCAGGGACCTCAGGGACACGTGGACAGAC
TGAGCGGCCAGCTCCAGGACTGGGGAGGCAGCCCCTTAGCTCCTGCTCTCCCTGTGTCTGCAGAACAACT
GGCGGGGCCACTGCTCTGTGGAAGATGCCAGGGCCACAATGGAGCTCTACAAAATCTCTCAGCGACTCAG
AGCCCAGCGAGGGCTGCCTTGCCCTGGGACGTCAGACTGAACTTCATCCTCATCCAGGGTTAG

Translation (300 aa):
MAGIPEVVAMDCEMVGLGPQRVSGLARCSIVNIHGAVLYDKYIRPEGEITDYRTQVSGVTPQHMVRATPF
GEARLEILQLLKGKLVVGHDLKHDFNALKEDMSKYTIYDTSTDRLLWHEAKLQYYSRVSLRLLCKRLLHK
NIQVLPGSLLGVGGCILPGTDILHLLLYVGMVRIADLRLLTPFLPPSCLACPLLPESLASARSHAVISAL
SSSSHLLTPLPNPSQGPQGHVDRLSGQLQDWGGSPLAPALPVSAEQLAGPLLCGRCQGHNGALQNLSATQ
SPARAALPWDVRLNFILIQG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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