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Report for CCDS72070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72070.1 Public Mus musculus 7 Syt8 23 108 98 CCDS HistoryNCBI Gene:55925Re-query CCDS DB by CCDS ID:72070.1Re-query CCDS DB by GeneID:55925See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72070.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122393.1 ENSMUSP00000112689.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122393.1Link to Ensembl Protein Viewer:ENSMUSP00000112689.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122393Re-query CCDS DB by Protein ID:ENSMUSP00000112689
Original member Current member NCBI NM_001285861.1 NP_001272790.1 Accepted alive Link to Nucleotide Sequence:NM_001285861.1Link to Protein Sequence:NP_001272790.1Re-query CCDS DB by Nucleotide ID:NM_001285861Re-query CCDS DB by Protein ID:NP_001272790Link to BLAST:NP_001272790.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272790.1 395 Q9R0N6-1 395 100% 0 0

Chromosomal Locations for CCDS 72070.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142436933 142436939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142438163 142438273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142438375 142438544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142438894 142438992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142439122 142439280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142439354 142439521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142439660 142439765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142439851 142439984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142440068 142440301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGCAAGCTGATAGGAGCATGAAGATGGGGCACGCCTTAAACCCCTTCAGCACCTCTGCCCCACTTGATG
CCACAGCTGGGCCCAGTCTCATCCCAGACCTCATCACCAGGATCCCCTGGCCTCGCTGGACCCTCTTTAT
CGCCATCCTTGCTGCTGGAGTCCTCTTAGTCTCCTGTTTGCTCTGTGTCATCTGTTGCTATTGCCACCGC
CATCGCCACAGGAAGCAACCCAAGGATAAAGAAACTGTGGGCCTGGGCAGTGCCCGTAATAGCACCACTA
CTCACCTGGTTCAACCAGATGTGGACTGCCTAGAACCCTGCTCTGGAGGGGACCAACAGTGGGGTCGACT
CCTGCTGTCACTAGAGTATGATTTTGGAAGCCAGGAGATTAGAGTGGGCCTGAGGCAGGCTGGAAACCTG
AAGGCTGAGGGCACAGCAGACCCCTACGCCTGGGTCAGTGTGTCCACCCAGTCTGGGAGAAGACATGAGA
CAAAGGTGCACCGAGGGACGCTCTCTCCCATGTTTGAAGAGACATGCTGCTTTCTGGTCCCACCAGCAGA
GCTGCCCAAAGCCACTCTGAAGGTGCAGCTGTGGGACTTCAAGCGGTTTTCAGAACACGAGCCACTGGGT
GAGCTCCAACTACCCCTGGGCACCGTGGACCTTCAACATGTCCTGGAGAGCTGGTACCAGCTAGGCCCTC
CAGGGACCACTGAGCCTGAGCAGATGGGGGAGCTGTGCTTCTCACTACGCTACGTGCCCAGCTCAGGCAG
CCTGACTGTGGTTGTACTGGAGGCTCGGGGTCTGAATCCGGGGCTTGCAGAGGCCTACGTGAAGATCCAG
CTTATGTTAAACCAGAGAAAATGGAAGAAGAGCAAAACATCCTCCAAGAAAGGCACGACTACCCCCTACT
TCAACGAGGCCTTCGTCTTCCTGGTTCCCGTTAGCCAGCTCCAGAGTGTGGACCTGGTGCTGGCTGTCTG
GGCCCGTGGTCTGCAGCTCCGGACTGAGCCTGTGGGCAAAGTGCTGCTGGGTTCCCGGGCTTCTGGCCAA
CCCCTACAGCACTGGGCAGACATGCTGGCCCATGCTCGGCGGCCCATCGCCCAGTGGCACCACCTGCGGT
CCCCCAGGGAAGTGGATCGTGTTCTGGCCCTGCAGCCTCGCCTTCCCCTGCTTAGGCCTCGCTCCTGA

Translation (395 aa):
MQADRSMKMGHALNPFSTSAPLDATAGPSLIPDLITRIPWPRWTLFIAILAAGVLLVSCLLCVICCYCHR
HRHRKQPKDKETVGLGSARNSTTTHLVQPDVDCLEPCSGGDQQWGRLLLSLEYDFGSQEIRVGLRQAGNL
KAEGTADPYAWVSVSTQSGRRHETKVHRGTLSPMFEETCCFLVPPAELPKATLKVQLWDFKRFSEHEPLG
ELQLPLGTVDLQHVLESWYQLGPPGTTEPEQMGELCFSLRYVPSSGSLTVVVLEARGLNPGLAEAYVKIQ
LMLNQRKWKKSKTSSKKGTTTPYFNEAFVFLVPVSQLQSVDLVLAVWARGLQLRTEPVGKVLLGSRASGQ
PLQHWADMLAHARRPIAQWHHLRSPREVDRVLALQPRLPLLRPRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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