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Report for CCDS7255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7255.1 Public Homo sapiens 10 FAM13C 24 110 108 CCDS HistoryNCBI Gene:220965Re-query CCDS DB by CCDS ID:7255.1Re-query CCDS DB by GeneID:220965See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7255.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618804.5 ENSP00000481854.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000618804.5Link to Ensembl Protein Viewer:ENSP00000481854.1Re-query CCDS DB by Nucleotide ID:ENST00000618804Re-query CCDS DB by Protein ID:ENSP00000481854
Original member Current member NCBI NM_198215.4 NP_937858.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198215.4Link to Protein Sequence:NP_937858.2Re-query CCDS DB by Nucleotide ID:NM_198215Re-query CCDS DB by Protein ID:NP_937858Link to BLAST:NP_937858.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937858.2 585 Q8NE31-1 585 100% 0 0

Chromosomal Locations for CCDS 7255.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 59247614 59247737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59251575 59251676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59252799 59252998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59254348 59254443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59262434 59262645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59264085 59264166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59268553 59268691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59269899 59270109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59283363 59283447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59302801 59302864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59323988 59324106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59352270 59352474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59355887 59355943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59362399 59362460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGTTTTCTTGTTTCTGTTTCAGCCTTCAGGATAATTCCTTCAGCAGCACCACTGTAACAGAGTGTGACG
AAGATCCAGTCTCTCTACATGAAGACCAGACTGATTGCTCCAGTCTCAGAGATGAAAACAATAAAGAGAA
CTACCCCGACGCAGGGGCTCTGGTAGAAGAGCACGCGCCGCCCTCTTGGGAGCCGCAGCAGCAGAATGTA
GAGGCGACCGTGCTGGTGGACAGCGTATTGCGACCCAGCATGGGCAACTTCAAGTCCAGGAAGCCCAAGT
CCATCTTCAAAGCGGAGAGCGGGAGGAGCCACGGAGAAAGTCAGGAGACAGAGCATGTGGTATCCAGCCA
GTCAGAGTGTCAGGTGAGAGCAGGAACACCAGCTCATGAGAGTCCACAAAACAATGCCTTCAAGTGCCAA
GAAACAGTGCGACTTCAACCAAGAATAGACCAGAGGACTGCCATTTCGCCAAAGGATGCTTTTGAAACTC
GGCAGGACTTAAATGAGGAAGAAGCTGCTCAGGTGCATGGAGTCAAGGACCCGGCGCCAGCATCAACCCA
GAGCGTGCTTGCCGATGGGACAGATTCTGCAGACCCCTCACCAGTCCACAAAGATGGGCAGAATGAGGCC
GACAGTGCACCAGAAGACCTCCACTCTGTGGGGACCAGCAGGCTGCTCTATCACATCACTGATGGTGATA
ACCCACTGCTGTCGCCACGATGCTCCATCTTCAGCCAAAGCCAGAGATTCAACTTAGACCCCGAGTCAGC
CCCATCTCCACCCAGCACTCAGCAGTTTATGATGCCGCGGAGTTCTTCACGCTGCAGCTGTGGAGATGGC
AAGGAGCCACAGACCATCACCCAGCTCACCAAGCACATCCAGAGCCTCAAGCGGAAAATTCGGAAATTTG
AAGAAAAATTTGAACAAGAAAAGAAATACCGGCCTTCACATGGTGACAAGACTTCTAATCCTGAAGTCCT
GAAATGGATGAATGATTTGGCTAAAGGTCGTAAACAGCTCAAAGAACTAAAGCTAAAGCTGTCAGAAGAA
CAAGGGAGTGCTCCCAAAGGTCCACCTAGAAACCTGTTGTGTGAGCAACCCACAGTCCCCAGAGAAAATG
GGAAACCGGAAGCTGCGGGCCCGGAGCCAAGCTCCTCTGGAGAAGAGACTCCAGATGCTGCCTTGACATG
CCTGAAGGAGAGAAGAGAGCAACTTCCTCCCCAGGAGGATTCTAAGGTAACTAAGCAAGACAAGAACCTC
ATAAAGCCGCTTTATGACCGATACAGAATTATCAAGCAAATCTTGTCAACACCTTCCCTTATTCCAACAA
TTCAGGAGGAAGAGGACTCTGATGAAGACCGTCCACAGGGAAGCCAACAACCTTCTTTGGCAGATCCAGC
ATCTCACCTTCCTGTTGGTGACCACCTCACCTACTCTAATGAGACTGAGCCTGTTAGGGCCCTTTTACCA
GATGAAAAGAAAGAAGTAAAACCACCAGCTCTCTCCATGTCTAATTTACATGAGGCTACCATGCCTGTAC
TTCTTGACCATCTCCGAGAAACTAGGGCTGACAAGAAGAGACTGCGGAAAGCCTTAAGAGAATTTGAAGA
ACAGTTTTTTAAACAAACAGGAAGAAGTCCACAAAAGGAAGATAGGATACCAATGGCAGATGAGTATTAT
GAATATAAGCACATAAAAGCCAAACTGAGACTATTAGAGGTCCTCATCAGCAAGCAAGATGTGGCCAAAA
CTATTTGA

Translation (585 aa):
MFSCFCFSLQDNSFSSTTVTECDEDPVSLHEDQTDCSSLRDENNKENYPDAGALVEEHAPPSWEPQQQNV
EATVLVDSVLRPSMGNFKSRKPKSIFKAESGRSHGESQETEHVVSSQSECQVRAGTPAHESPQNNAFKCQ
ETVRLQPRIDQRTAISPKDAFETRQDLNEEEAAQVHGVKDPAPASTQSVLADGTDSADPSPVHKDGQNEA
DSAPEDLHSVGTSRLLYHITDGDNPLLSPRCSIFSQSQRFNLDPESAPSPPSTQQFMMPRSSSRCSCGDG
KEPQTITQLTKHIQSLKRKIRKFEEKFEQEKKYRPSHGDKTSNPEVLKWMNDLAKGRKQLKELKLKLSEE
QGSAPKGPPRNLLCEQPTVPRENGKPEAAGPEPSSSGEETPDAALTCLKERREQLPPQEDSKVTKQDKNL
IKPLYDRYRIIKQILSTPSLIPTIQEEEDSDEDRPQGSQQPSLADPASHLPVGDHLTYSNETEPVRALLP
DEKKEVKPPALSMSNLHEATMPVLLDHLRETRADKKRLRKALREFEEQFFKQTGRSPQKEDRIPMADEYY
EYKHIKAKLRLLEVLISKQDVAKTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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