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Report for CCDS72789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72789.1 Public Homo sapiens 1 TTC39A 24 110 108 CCDS HistoryNCBI Gene:22996Re-query CCDS DB by CCDS ID:72789.1Re-query CCDS DB by GeneID:22996See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72789.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262675.11 ENSP00000262675.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262675.11Link to Ensembl Protein Viewer:ENSP00000262675.7Re-query CCDS DB by Nucleotide ID:ENST00000262675Re-query CCDS DB by Protein ID:ENSP00000262675
Original member Current member EBI ENST00000422925.6 ENSP00000388995.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422925.6Link to Ensembl Protein Viewer:ENSP00000388995.2Re-query CCDS DB by Nucleotide ID:ENST00000422925Re-query CCDS DB by Protein ID:ENSP00000388995
Original member Current member NCBI NM_001297664.1 NP_001284593.1 Accepted alive Link to Nucleotide Sequence:NM_001297664.1Link to Protein Sequence:NP_001284593.1Re-query CCDS DB by Nucleotide ID:NM_001297664Re-query CCDS DB by Protein ID:NP_001284593Link to BLAST:NP_001284593.1

Chromosomal Locations for CCDS 72789.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 51288157 51288280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51288839 51288955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51290005 51290119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51290514 51290625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51294391 51294511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51296079 51296170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51301572 51301733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51302357 51302416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51302506 51302573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51303084 51303192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51305081 51305146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51305977 51306076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51309261 51309325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51311254 51311321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51312119 51312195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51312812 51312943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51321721 51321785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGACCGCCCTGGACCTCTTCCTCACCAACCAGTTCTCAGAAGCACTCAGCTACCTCAAGCCCAGAACCA
AGGAAAGCATGTACCACTCACTGACATATGCCACCATCCTGGAGATGCAGGCCATGATGACCTTTGACCC
TCAGGACATCCTGCTTGCCGGCAACATGATGAAGGAGGCACAGATGCTGTGTCAGAGGCACCGGAGGAAG
TCTTCTGTAACAGATTCCTTCAGCAGCCTGGTGAACCGCCCCACGCTGGGCCAATTCACTGAAGAGGAAA
TCCACGCTGAGGTCTGCTATGCAGAGTGCCTGCTGCAGCGAGCAGCCCTGACCTTCCTGCAGGACGAGAA
CATGGTGAGCTTCATCAAAGGCGGCATCAAAGTTCGAAACAGCTACCAGACCTACAAGGAGCTGGACAGC
CTTGTTCAGTCCTCACAATACTGCAAGGGTGAGAACCACCCGCACTTTGAAGGAGGAGTGAAGCTTGGTG
TAGGGGCCTTCAACCTGACACTGTCCATGCTTCCTACTAGGATCCTGAGGCTGTTGGAGTTTGTGGGGTT
TTCAGGAAACAAGGACTATGGGCTGCTGCAGCTGGAGGAGGGAGCGTCAGGGCACAGCTTCCGCTCTGTG
CTCTGTGTCATGCTCCTGCTGTGCTACCACACCTTCCTCACCTTCGTGCTCGGTACTGGGAACGTCAACA
TCGAGGAGGCCGAGAAGCTCTTGAAGCCCTACCTGAACCGGTACCCTAAGGGTGCCATCTTCCTGTTCTT
TGCAGGGAGGATTGAAGTCATTAAAGGCAACATTGATGCAGCCATCCGGCGTTTCGAGGAGTGCTGTGAG
GCCCAGCAGCACTGGAAGCAGTTCCACCACATGTGCTACTGGGAGCTGATGTGGTGCTTCACCTACAAGG
GCCAGTGGAAGATGTCCTACTTCTACGCCGACCTGCTCAGCAAGGAGAACTGCTGGTCCAAGGCCACCTA
CATTTACATGAAGGCCGCCTACCTCAGCATGTTTGGGAAGGAGGACCACAAGCCGTTCGGGGACGACGAA
GTGGAATTATTTCGAGCTGTGCCAGGCCTGAAGCTCAAGATTGCTGGGAAATCTCTACCCACAGAGAAGT
TTGCCATCCGGAAGTCCCGGCGCTACTTCTCCTCCAACCCTATCTCGCTGCCAGTGCCTGCTCTGGAAAT
GATGTACATCTGGAACGGCTACGCCGTGATTGGGAAGCAGCCGAAACTCACGGATGGGATACTTGAGATT
ATCACTAAGGCTGAAGAGATGCTGGAGAAAGGCCCAGAGAACGAGTACTCAGTGGATGACGAGTGCTTGG
TGAAATTGTTGAAAGGCCTGTGTCTGAAATACCTGGGCCGTGTCCAGGAGGCCGAGGAGAATTTTAGGAG
CATCTCTGCCAATGAAAAGAAGATTAAATATGACCACTACTTGATCCCAAACGCCCTGCTGGAGCTGGCC
CTGCTGCTTATGGAGCAAGACAGAAACGAAGAGGCCATCAAACTTTTGGAATCTGCCAAGCAAAACTACA
AGAATTACTCCATGGAGTCAAGGACACACTTTCGAATCCAGGCAGCCACACTCCAAGCCAAGTCTTCCCT
AGAGAACAGCAGCAGATCCATGGTCTCATCAGTGTCCTTGTAG

Translation (550 aa):
MTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRK
SSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQDENMVSFIKGGIKVRNSYQTYKELDS
LVQSSQYCKGENHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSV
LCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAAIRRFEECCE
AQQHWKQFHHMCYWELMWCFTYKGQWKMSYFYADLLSKENCWSKATYIYMKAAYLSMFGKEDHKPFGDDE
VELFRAVPGLKLKIAGKSLPTEKFAIRKSRRYFSSNPISLPVPALEMMYIWNGYAVIGKQPKLTDGILEI
ITKAEEMLEKGPENEYSVDDECLVKLLKGLCLKYLGRVQEAEENFRSISANEKKIKYDHYLIPNALLELA
LLLMEQDRNEEAIKLLESAKQNYKNYSMESRTHFRIQAATLQAKSSLENSSRSMVSSVSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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