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Report for CCDS72898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72898.1 Public Homo sapiens 1 PPIAL4C 24 110 108 CCDS HistoryNCBI Gene:653598Re-query CCDS DB by CCDS ID:72898.1Re-query CCDS DB by GeneID:653598See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72898.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000585245.3 ENSP00000463057.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000585245.3Link to Ensembl Protein Viewer:ENSP00000463057.2Re-query CCDS DB by Nucleotide ID:ENST00000585245Re-query CCDS DB by Protein ID:ENSP00000463057
Original member Current member NCBI NM_001135789.5 NP_001129261.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135789.5Link to Protein Sequence:NP_001129261.2Re-query CCDS DB by Nucleotide ID:NM_001135789Re-query CCDS DB by Protein ID:NP_001129261Link to BLAST:NP_001129261.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129261.2 164 A0A0B4J2A2 164 100% 0 0

Chromosomal Locations for CCDS 72898.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 149583898 149584392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGGTCAACTCCGTCGTCTTTTTTGACATCACCGTCGACGGCAAGCCCTTGGGCCGCATCTCCATCAAAC
TGTTTGCAGACAAGATTCCAAAGACAGCAGAAAACTTTCGTGCTCTGAGCACTGGAGAGAAAGGATTTCG
TTATAAGGGTTCCTGCTTTCACAGAATTATTCCAGGGTTTATGTGTCAGGGTGGTGACTTCACACGCCCT
AATGGCACCGGTGACAAGTCCATCTATGGGGAGAAATTTGATGATGAGAACCTCATCCGAAAGCATACAG
GTTCTGGCATCTTGTCCATGGCAAATGCTGGACCCAACACAAATGGTTCCCAGTTTTTCATCTGCACTGC
CAAGACTGAGTGGTTGGATGGCAAGCATGTGGCCTTTGGCAAGGTGAAAGAACGTGTGAATATTGTGGAA
GCCATGGAGCACTTTGGGTACAGGAATAGCAAGACCAGCAAGAAGATCACCATTGCTGACTGTGGACAAT
TCTAA

Translation (164 aa):
MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRP
NGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVE
AMEHFGYRNSKTSKKITIADCGQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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