NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS73031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73031.1 Public Homo sapiens 1 GPATCH2 24 110 108 CCDS HistoryNCBI Gene:55105Re-query CCDS DB by CCDS ID:73031.1Re-query CCDS DB by GeneID:55105See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73031.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366934.3 ENSP00000355901.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366934.3Link to Ensembl Protein Viewer:ENSP00000355901.3Re-query CCDS DB by Nucleotide ID:ENST00000366934Re-query CCDS DB by Protein ID:ENSP00000355901
Original member Current member NCBI NM_001297754.3 NP_001284683.1 Accepted alive Link to Nucleotide Sequence:NM_001297754.3Link to Protein Sequence:NP_001284683.1Re-query CCDS DB by Nucleotide ID:NM_001297754Re-query CCDS DB by Protein ID:NP_001284683Link to BLAST:NP_001284683.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284683.1 376 Q9NW75-2 376 100% 0 0

Chromosomal Locations for CCDS 73031.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 217610160 217610192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217610321 217610400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217610889 217611071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217614141 217614202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217619783 217620499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217630916 217630971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGTTCGGGGCCGCCGGGCGCCAACCGATCGGAGCTCCAGCAGCCGGGAACAGCTGGCATTTCAGTAGAA
CCATGGAGGAGCTGGTTCATGACCTTGTCTCAGCATTGGAAGAGAGCTCAGAGCAAGCTCGAGGTGGATT
TGCTGAAACAGGAGACCATTCTCGAAGTATATCTTGCCCTCTGAAACGCCAGGCAAGGAAAAGGAGAGGG
AGAAAACGGAGGTCGTATAATGTGCATCACCCGTGGGAGACTGGTCACTGCTTAAGTGAAGGCTCTGATT
CTAGTTTAGAAGAACCAAGCAAGGACTATAGAGAGAATCACAATAATAATAAAAAAGATCACAGTGACTC
TGATGACCAAATGTTAGTAGCAAAGCGCAGGCCGTCATCAAACTTAAATAATAATGTTCGAGGGAAAAGA
CCTCTATGGCATGAGTCTGATTTTGCTGTGGACAATGTTGGGAATAGAACTCTGCGCAGGAGGAGAAAGG
TAAAACGCATGGCAGTAGATCTCCCACAGGACATCTCTAACAAACGGACAATGACCCAGCCACCTGAGGG
TTGTAGAGATCAGGACATGGACAGTGATAGAGCCTACCAGTATCAAGAATTTACCAAGAACAAAGTCAAA
AAAAGAAAGTTGAAAATAATCAGACAAGGACCAAAAATCCAAGATGAAGGAGTAGTTTTAGAAAGTGAGG
AAACGAACCAGACCAATAAGGACAAAATGGAATGTGAAGAGCAAAAAGTCTCAGATGAGCTCATGAGTGA
AAGTGATTCCAGCAGTCTCAGCAGCACTGATGCTGGATTGTTTACCAATGATGAGGGAAGACAAGGTGAT
GATGAACAGAGTGACTGGTTCTACGAAAAGGAATCAGGTGGAGCATGTGGTATCACTGGAGTTGTGCCCT
GGTGGGAAAAGGAAGATCCTACTGAGCTAGACAAAAATGTACCAGATCCTGTCTTTGAAAGTATCTTAAC
TGGTTCTTTTCCCCTTATGTCACACCCAAGCAGAAGAGGTTTCCAAGCTAGACTCAGTCGCCTTCATGGA
ATGTCTTCAAAGAATATTAAAAAATCTGGAGGGACTCCAACTTCAATGGCTACAAACTGGACCAGTGAGA
TTCCCCTATAA

Translation (376 aa):
MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSISCPLKRQARKRRG
RKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSDDQMLVAKRRPSSNLNNNVRGKR
PLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNKRTMTQPPEGCRDQDMDSDRAYQYQEFTKNKVK
KRKLKIIRQGPKIQDEGVVLESEETNQTNKDKMECEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGD
DEQSDWFYEKESGGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHG
MSSKNIKKSGGTPTSMATNWTSEIPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH